Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/H12I19.5b
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Query:  H12I19.5b  CE16178    status:Predicted TR:O45620 protein_id:CAB11541.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Acyl_transf_3   Acyltransferase family                  459.4     3e-134   1
CHD5            CHD5-like protein                         6.1        1.4   1
FTSW_RODA_SPOVE Cell cycle protein                        2.5        7.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
CHD5              1/1     161   214 ..   154   199 .]     6.1      1.4
FTSW_RODA_SPOVE   1/1     204   218 ..   369   383 .]     2.5      7.1
Acyl_transf_3     1/1       2   351 ..     1   464 []   459.4   3e-134

Alignments of top-scoring domains:
CHD5: domain 1 of 1, from 161 to 214: score 6.1, E = 1.4
                   *->VavipekwsilPldklgllsF........PtrvagsVSltiWvfavn
                      ++++p+k +il ++ lgl sF  ++   + t + +sV+  +W fa+
   H12I19.5b   161    IRTLPQKCHILCFTILGLFSFmysklfctETEAFNSVFARVWQFAIG 207

                   ktisgif<-*
                    + +++
   H12I19.5b   208 IIANIVS    214

FTSW_RODA_SPOVE: domain 1 of 1, from 204 to 218: score 2.5, E = 7.1
                   *->iliGiLlnisretkk<-*
                      ++iGi++ni +etk
   H12I19.5b   204    FAIGIIANIVSETKL    218

Acyl_transf_3: domain 1 of 1, from 2 to 351: score 459.4, E = 3e-134
                   *->srrldldglRGlAIllVvlfHfaptlffgttdvfsllsylkpngylg
                      ++rld +g RGlAIl+V++fHf+p+ f              pngylg
   H12I19.5b     2    NKRLDPQGVRGLAILSVLGFHFLPDVF--------------PNGYLG 34

                   VDlFFViSGfLmtmlllrrarqaeklslfssfteFykrRfkRilPlYllf
                   VD+FFV+SGfLm+mll++++ +a+ +s f++++ Fy rR+kRilPlYll
   H12I19.5b    35 VDQFFVLSGFLMCMLLRKSSISASYKSNFQFIVAFYHRRLKRILPLYLL- 83

                   villslialyllfpdtaletnwrsalaaLllvsnrlkiheedYFdmflal
                   vi  s i+l+++ pdtal tn+rs+  aL+++snr ++ eedYF +   l
   H12I19.5b    84 VIMSSSIFLFWMIPDTALLTNLRSGEKALIFISNRMATLEEDYFAR---L 130

                   ssaidifthlWSLsvEmqFYllvpliflllrlklpneklkrallrrallv
                   s a+difth+WSLsvE+qFYl++pli+ll+  +   +k++
   H12I19.5b   131 SYATDIFTHTWSLSVEVQFYLIIPLIYLLII-RTLPQKCH---------- 169

                   laivallglislvifalipd.syafnsvaldwfiyftfarlwqFlaGalv
                   ++ + +lgl+s+ ++ l+ ++++afnsv         far+wqF++G+++
   H12I19.5b   170 ILCFTILGLFSFMYSKLFCTeTEAFNSV---------FARVWQFAIGIIA 210

                   ylwsksk.iqeissskskeevecklldesedssilawlafaakifrrrlp
                   +++s++k ++++++                          +  ++   ++
   H12I19.5b   211 NIVSETKlWSDDYN-------------------------QIEGSKNAMIW 235

                   srlrkyllllallavaalpfalpnsltslfvrpyglglvsvkvlllvtlv
                   +++ k ++l+++++v+++p     +l +  +r            +l+t+v
   H12I19.5b   236 KKVMKNCCLVLMIVVLIYP----IKLPAGTIR------------TLFTIV 269

                   tallilvseglnntrlqgllgrsqlLsnrlLvylGdiSYslYLvHWPvia
                   t+lli++s++ ++           +Ls r+L+y+Gd SYslYL+HWP++a
   H12I19.5b   270 TGLLIMISQN-DE-----------ILSVRVLTYIGDVSYSLYLIHWPIYA 307

                   ywklttggdmlikaillgfvflsvlqqygafwlltsnlgllllallvsil
                   ywkl    +                          ++ + lll++l+s++
   H12I19.5b   308 YWKLVLSAG-------------------------STMNFQLLLIFLISVV 332

                   laillhefvEkpylkllsr<-*
                   l+++++ef+Ek yl+l+ r
   H12I19.5b   333 LSVISFEFFEKKYLRLPDR    351



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