Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H13N06.4
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Query: H13N06.4 CE18814 Heme-binding domain in cytochrome b5 and oxidoreductases, Oxidoreductase molybdopterin binding domain status:Partiall
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
oxidored_molyb Oxidoreductase molybdopterin binding d 311.1 1.6e-101 1
Mo-co_dimer Mo-co oxidoreductase dimerisation doma 227.8 1.1e-64 1
heme_1 Heme/Steroid binding domain 67.5 1e-17 1
BNR BNR/Asp-box repeat 10.1 0.46 1
Coatomer_E Coatomer epsilon subunit 5.9 0.77 1
SURF4 SURF4 family 3.3 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
heme_1 1/1 81 157 .. 1 78 [] 67.5 1e-17
Coatomer_E 1/1 202 211 .. 1 10 [. 5.9 0.77
SURF4 1/1 237 246 .. 265 274 .] 3.3 7
oxidored_molyb 1/1 162 388 .. 1 240 [] 311.1 1.6e-101
BNR 1/1 456 467 .. 1 12 [] 10.1 0.46
Mo-co_dimer 1/1 410 540 .. 1 153 [] 227.8 1.1e-64
Alignments of top-scoring domains:
heme_1: domain 1 of 1, from 81 to 157: score 67.5, E = 1e-17
*->yytleelrehdkkdgrilvainGkVYDltrflafhpgGasallafaG
+y ee+++h k +ri+v +++ VYD+t+f+a+hpgG + +l++aG
H13N06.4 81 IYKQEEVKKHGKDADRIWVTYKDGVYDVTDFIAMHPGG-DKILLAAG 126
rDaTaaf.klaahreeaaeelleklykvGrvd<-*
+ +++ ++++h+++ + e+le y++G++d
H13N06.4 127 AAVDPFWaLYSQHKTKEVLEILEG-YRIGKLD 157
Coatomer_E: domain 1 of 1, from 202 to 211: score 5.9, E = 0.77
*->tpDeLFdvRN<-*
tp+eLF+vRN
H13N06.4 202 TPNELFFVRN 211
SURF4: domain 1 of 1, from 237 to 246: score 3.3, E = 7
*->vSvDEkKKkW<-*
+Sv E+KKk+
H13N06.4 237 LSVEELKKKY 246
oxidored_molyb: domain 1 of 1, from 162 to 388: score 311.1, E = 1.6e-101
*->DekTpDawveRPmdprliRLTGkHPFNaEPPLtrLmeeGFiTPnpLH
+++ +Da+ ++P +++++ + +PFNaE P++ L++ F TPn+L+
H13N06.4 162 PKPVADAFSNDPERHPALLVRNSKPFNAETPPS-LLTDHFYTPNELF 207
YVRNHGpVPrvereewedWtfeVtGLVerPlkltmdeLvekFpydsvefP
+VRNH+pVP + e+++++V+ ++++ l+++eL++k y s +
H13N06.4 208 FVRNHLPVP---DIKTENHRLTVETIKGKTVDLSVEELKKK--YKSYTIG 252
vTLVCAGNRRKEQNmVkkskGFnWGaAGvSTalWtGVrLrdvLrraGpks
+CAGNRR +N kk+ G+ W ++S a+WtGVrLrd+L+ aG++
H13N06.4 253 SVIQCAGNRRADMNQYKKVQGLMWEGTAISNAEWTGVRLRDLLADAGIDV 302
klrsggAkyVCFEGadddLPgGggskYGTSiklnwAMDPnrdvllAykmN
++ k+V FEGa d +P+G+ +YG+Si+ ++A + +v++Ay mN
H13N06.4 303 FD--DKIKHVHFEGA-DVDPTGT--PYGASIPIEKA--RGDEVIVAYHMN 345
GepLsPDHGfPVRvvVPGqIGGRmVKWLkRIvVtdeESdnhYH<-*
G + ++DHG P+Rv+VPG +G+R VKWL++I+V+++ESd+h++
H13N06.4 346 GVDIPRDHGAPLRVIVPGNVGARQVKWLRKIIVSEKESDSHWQ 388
BNR: domain 1 of 1, from 456 to 467: score 10.1, E = 0.46
*->yyStDgGkTWsk<-*
+S DgG+TW+
H13N06.4 456 EVSVDGGETWNS 467
Mo-co_dimer: domain 1 of 1, from 410 to 540: score 227.8, E = 1.1e-64
*->ryaIydLnvnSaIcsPahgevvklgadttagtytikGYAYsGGGRrI
++I++++v++aIcsPa++ +v+ g+ +t+ i+GYA+sGGGR+I
H13N06.4 410 VPSIQEYPVQCAICSPAPNTKVDRGD----ETVDISGYAWSGGGRGI 452
tRVEVSLDgGksWrlAeieyeedpyRyadGkLFGGrvDmqwretcfcWcf
+R+EVS+DgG++W+ e+e+ee +q++e++++W++
H13N06.4 453 IRIEVSVDGGETWNSVEMEQEE----------------KQDQEHMYAWTL 486
WsLdvpvsegqLkgekeIlvRAvDeslnvQPrnvdmyWNvrGmmNNaWfR
++++v++++g +e +I+++AvD+++n+QP+++ +WNvrG ++NaW+R
H13N06.4 487 FKAEVKIPPG--VKEFNIIAKAVDRAYNTQPETASGIWNVRGLIHNAWHR 534
VkIhve<-*
V I+v+
H13N06.4 535 VPIIVK 540