Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H14A12.2
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Query: H14A12.2 CE11580 fumarase status:Partially_confirmed TR:O17214 protein_id:AAB70982.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lyase_1 Lyase 726.2 1.4e-214 1
LysE LysE type translocator 4.4 6.2 1
YicC_N-term YicC-like family, N-terminal region 3.1 8.7 1
T4_tail_gp36 Phage T4 tail fibre 1.4 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LysE 1/1 58 96 .. 17 60 .. 4.4 6.2
YicC_N-term 1/1 92 120 .. 68 96 .. 3.1 8.7
T4_tail_gp36 1/1 355 388 .. 127 160 .. 1.4 7.3
lyase_1 1/1 49 495 .. 1 485 [] 726.2 1.4e-214
Alignments of top-scoring domains:
LysE: domain 1 of 1, from 58 to 96: score 4.4, E = 6.2
*->wlGvqmlRaAwrfspldnselaspqvesvslrasftvlakgllv<-*
++G q++R++++f+ +++ e + ++ ++f +l k++++
H14A12.2 58 YYGAQTARSQMNFK-IGGPEERM----PIPVIHAFGILKKAAAL 96
YicC_N-term: domain 1 of 1, from 92 to 120: score 3.1, E = 8.7
*->ereevasgeLevNeellkqlveaakelaa<-*
+ ++++++e+ ++++l++++++aa+e+++
H14A12.2 92 KAAALVNTEFGLDKKLADAISQAADEVVD 120
T4_tail_gp36: domain 1 of 1, from 355 to 388: score 1.4, E = 7.3
*->vselttGditvktceglvsatdavisnsitvasa<-*
+s +++G+++ + ce +++ + +v+ n ++v+ +
H14A12.2 355 GSSIMPGKVNPTQCEAITMVAAQVMGNQVAVSVG 388
lyase_1: domain 1 of 1, from 49 to 495: score 726.2, E = 1.4e-214
*->GrftvpaDalmgiftersrenfrlseedikmpeeLvhglaalkkAaa
G+++vpaD+++g++t+rs +nf++++ ++mp++++h++++lkkAaa
H14A12.2 49 GELEVPADKYYGAQTARSQMNFKIGGPEERMPIPVIHAFGILKKAAA 95
kanvplgqLdkeeaaaIikaldevleegkldDqfvlaviqegsgtavnmn
+n + Ldk+ a+aI +a+dev++ gkld++f+l+++q+gsgt++nmn
H14A12.2 96 LVNTEF-GLDKKLADAISQAADEVVD-GKLDEHFPLVTWQTGSGTQSNMN 143
lnEvigNrAlEllGgekGdeqklhpndkvhtgqSsNDqvpTalrlalkda
+nEvi+NrA+E+lGge+G+++++hpnd+v+++qSsND++pTa+++a+ +
H14A12.2 144 VNEVISNRAIEILGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAVGRE 193
ltelLlpaLgqLidalkeYkAeefadvvkmGRTHLQdAtPvTLGqelsay
++ +LlpaL++L+ al + kAeef+d++k+GRTH+QdA+P+TLGqe+say
H14A12.2 194 VNSRLLPALKKLRTALHN-KAEEFKDIIKIGRTHTQDAVPLTLGQEFSAY 242
aqalerdlelRlkealkrllveplgGGTavGTglnadpmeyaellaeeLa
+++l ++ R++ l + l+ ++ GGTavGTgln+ +ae++a+ ++
H14A12.2 243 VTQLDNSIA-RVESTL-PRLYQLAAGGTAVGTGLNTRK-GFAEKVAATVS 289
eegftglpfvpapnsfeAtsdrDavveflgalallavsLsKiGAnDlrll
++tglpfv+apn+feA++++Da+ve++gal+++avs +KiG nD+r+l
H14A12.2 290 --ELTGLPFVTAPNKFEALAAHDALVEVHGALNTVAVSFMKIG-NDIRFL 336
ssGPRaGlveislpenepGSSiMPgKvNPvqlEleselrgkagrVvGndl
+sGPR+Gl+e+slpenepGSSiMPgKvNP+q+E+ ++++a++V+Gn +
H14A12.2 337 GSGPRCGLGELSLPENEPGSSIMPGKVNPTQCEA---ITMVAAQVMGNQV 383
aitmavklvqGhErqlelNvdlpeigenifdsvdtlldalqsftegvvvg
a+ + ++ +G ++elNv++p+i+ n+++s ++l+d++ sft+++v+g
H14A12.2 384 AVSVGGS--NG---HFELNVFKPLIVRNVLQSTRLLADSAVSFTDHCVDG 428
ieankermrraLelkslaTlvtallvriGypfaeaHakigkaaheAeesm
i ank+++ + ++ + lvtal+++iGy++a aki+k+ah+
H14A12.2 429 IVANKDNIAKIMRESL-M-LVTALNPHIGYDNA---AKIAKTAHK----- 468
ImLkGatlkelalelgqlteeefdsivsPvfefarSve<-*
+G+tl ++a++lg ltee+f +v+P e
H14A12.2 469 ---NGTTLVQEAVKLGILTEEQFAQWVKP--------E 495