Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H14N18.4a
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Query: H14N18.4a CE17976 transpeptidase status:Partially_confirmed TR:O61978 protein_id:AAC17783.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
G_glu_transpept Gamma-glutamyltranspeptidase 827.3 5.5e-245 1
FUSC Fusaric acid resistance protein conse 5.8 3.2 1
HN Hemagglutinin-neuraminidase 3.4 3 1
APC10 Anaphase-promoting complex, subunit 1 2.9 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HN 1/1 20 67 .. 1 51 [. 3.4 3
FUSC 1/1 139 153 .. 106 120 .] 5.8 3.2
APC10 1/1 436 468 .. 189 221 .] 2.9 7.5
G_glu_transpept 1/1 119 626 .. 1 551 [] 827.3 5.5e-245
Alignments of top-scoring domains:
HN: domain 1 of 1, from 20 to 67: score 3.4, E = 3
*->mykdnnrakttrvnldrkrtwRlifRpliLllvltiLf.LsliiLla
+++d n+ +r + k+ + +++i +vl+iLf Ls+i+L++
H14N18.4a 20 FSSDINHIHRNR--KEEKKGC--SKWTTIAFGVLAILFlLSTIALAI 62
iagir<-*
+ gi+
H14N18.4a 63 VVGIK 67
FUSC: domain 1 of 1, from 139 to 153: score 5.8, E = 3.2
*->LglsrPksagiamgl<-*
+g+ +P+s+gi++g+
H14N18.4a 139 IGTVNPQSSGIGGGF 153
APC10: domain 1 of 1, from 436 to 468: score 2.9, E = 7.5
*->gPviersevahelfhgNHATptsvdfvtyatir<-*
+P + s+v++ hgN +ts+ ++ +++r
H14N18.4a 436 APDHGTSHVSIIDSHGNAVSCTSTVNQILGSMR 468
G_glu_transpept: domain 1 of 1, from 119 to 626: score 827.3, E = 5.5e-245
*->aeiLrkGGNAvDAAVAaalcLgVVePhssGIGGGgFmliydaktgkv
+++L +GGNAvDA++A++lc+g V+P+ssGIGGG++m++y+a+tg +
H14N18.4a 119 RDVLIEGGNAVDAMIASLLCIGTVNPQSSGIGGGFVMTLYNASTGMC 165
lviFDaREtAPaaAtkdmfldkdgkgdpklsktGglavgVPGevaGleea
++i +aREtAPaaAt++mf ++pk s+ G++++++P e++G++++
H14N18.4a 166 QTI-NARETAPAAATETMF-----VDNPKESVMGYKSIATPSELHGFWTV 209
hkryGSGrLpwadLlePAIkLArdGFpVspylaaalasaeerflradpgl
+ +yGSG+++wa+L++P+I+LA+dGFpVs +la +r+++
H14N18.4a 210 FNMYGSGKVSWARLFQPSITLAHDGFPVSSNLA----------MRKFSR- 248
aWfkiFlpp.tGrpplkaGdllkqPdLAkTLelIAeS.eGpeaFYrGelA
+iF +p+t+r+ +++Gd+lk++ LA T+ l+A++++++e FY+G +A
H14N18.4a 249 ---DIFVNPkTNRV-YEEGDILKRQRLASTYALLANAtDPVELFYKGGMA 294
ealvadlqanGGiiTleDLanYkvevreP.lsgdyfrggytvyepPPsSg
++++ ++ +nGG + + DLa+Y++ + +++l ++++ g+y++++pPP+S+
H14N18.4a 295 QTIAGEITDNGGFVNESDLASYETTIDDApLLSTHLPGDYEMCGPPPPSS 344
GivllqiLniLegfdflsslglgsgesdpdsaeyvHllvEAmKlAyadRt
+++++ i +++ +++ +g+ d d+++ +H+l+EA+K+Aya+Rt
H14N18.4a 345 FVITQNIIQVMAQYY-------KDGQVDLDDPLVYHRLIEAEKFAYAQRT 387
rYLGDPdFvpvptelveeLLskayakerralIndnaafpsppgppppdsp
+ LGD +Fv+ ++ lv+e+ +++y+k++++lI+d+a++
H14N18.4a 388 K-LGDVKFVESAKTLVDEMMTEEYTKKIASLIKDTAQTL----------- 425
ptAssyygaapaa.etdggTtHfsVvDrdGNaVSaTsTiNllFGSgvvvp
++y+g++ ++ + d+gT+H+s++D++GNaVS+TsT+N+++GS++ +p
H14N18.4a 426 ---DYYGGEKKDMaP-DHGTSHVSIIDSHGNAVSCTSTVNQILGSMRASP 471
gTGilLNNeMdDFsatPGvpNafglapshaNaiePGKRPlSSmsPtivlk
+Gi++N++MdDFs tPG++N+fg aps++N+i+PGKRP+SSmsP+i+++
H14N18.4a 472 TLGIVWNDQMDDFS-TPGMKNSFGYAPSETNFIQPGKRPMSSMSPMIIYN 520
...GkpvlyvlGapGGsrIiqavlqvivnvldfgmnlqeAvdaPRfhhds
++++++ + v+Ga+GGs+Ii+a++q+++++l f++ +++AvdaPRfh+
H14N18.4a 521 kneNRVEM-VTGASGGSYIISATAQTVIRTLLFNQTVKAAVDAPRFHN-- 567
gpgQllPdvvevEpfgfpeevlaeLedarGHkvkvvpvssgvgaiiiv..
Q+lP+++e+E+ ++p ++++ L +++ ++++vvp+ +v+++ i +
H14N18.4a 568 ---QYLPETTETEE-AMPLALREVLVEQYKQNFTVVPRQKSVVQALISle 613
gvlygasDpRrdG<-*
g+++g+sD+Rr++
H14N18.4a 614 GFVEGNSDFRRKT 626