Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H19N07.1
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Query: H19N07.1 CE16181 elongation factor status:Partially_confirmed TR:O45622 protein_id:CAB07395.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GTP_EFTU Elongation factor Tu GTP binding domain 296.4 3.4e-85 1
GTP_EFTU_D3 Elongation factor Tu C-terminal domain 95.0 1.2e-25 2
GTP_EFTU_D2 Elongation factor Tu domain 2 50.2 1.3e-12 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GTP_EFTU 1/1 107 333 .. 1 298 [] 296.4 3.4e-85
GTP_EFTU_D2 1/1 345 419 .. 1 96 [] 50.2 1.3e-12
GTP_EFTU_D3 1/2 424 461 .. 1 38 [. 20.1 0.00023
GTP_EFTU_D3 2/2 507 572 .. 43 113 .] 74.4 8.4e-20
Alignments of top-scoring domains:
GTP_EFTU: domain 1 of 1, from 107 to 333: score 296.4, E = 3.4e-85
*->krhrNigiiGHVDHGKTTLtdrLlyytgaisertleklegeakegge
k h+N++++GHVD+GK+T + L++ tg++++rtlek+e+eake+g
H19N07.1 107 KEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKG- 152
rkgsfklarviDkmeeEreRGITIksahvsfewkdededletkakegkkr
++s++l++ +D+++eEre G+T+ + ++fe
H19N07.1 153 -RESWYLSWCMDTNDEEREKGKTVEVGRAYFE------------------ 183
gnelTekrhiniIDTPGHvDFtkevirGlaqaDGAiLVVdAveGvmp.Gf
Tekrh++i+D+PGH F+ ++i G+ qaD A+LV++A+ G++++Gf
H19N07.1 184 ----TEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFEtGF 229
.k.GQTrehlrlArqlgvppiilvVaiNKiDrvgaelklppvpeelyeel
+++GQTreh +l +++gv+ +lv+ +NK+D ++ + ee+++e+
H19N07.1 230 dRgGQTREHSMLVKTAGVK--HLVILVNKMDDPTVK-----WEEERFKEI 272
ekevrellkpIgedfgvidlilaevaeddlmeyyfegeeipiipiSalgg
e ++ ++l + ++++ +i+ +p+S+l+g
H19N07.1 273 EGKLTPFLRK---------------------LGFNPKTDITYVPCSGLTG 301
dnidelsiknkLkkddlslvPwykgvSalknkgrkrgaiptLLealddyl
i+++ s wy g p+++e +d +l
H19N07.1 302 AFIKDRPTG--------SEGNWYSG--------------PCFIEFIDVLL 329
PsPe<-*
Ps +
H19N07.1 330 PSYK 333
GTP_EFTU_D2: domain 1 of 1, from 345 to 419: score 50.2, E = 1.3e-12
*->adVfkikytmDpyrrTSdGrGtVatgRvesGtlkkGdeveiggngtk
a ++ + GtV+ g+ esG + kGd++++++n
H19N07.1 345 AEKYSEM-------------GTVIIGKMESGCVQKGDTLVVMPN--- 375
kkdvpevtrVtslemfhg.ldeavaGdnaGlivagiglkdaaikrGdvla
++ + V +++ + + +++vaGdn+ + ++gi+ ++ ++ G +++
H19N07.1 376 ----KQPVQVLQIWADDVeTERVVAGDNIKFKLKGIEENE--LQGGFIIC 419
<-*
H19N07.1 - -
GTP_EFTU_D3: domain 1 of 2, from 424 to 461: score 20.1, E = 0.00023
*->sikphtkFeAqVyvLnkeeqIggRhtPffdgYtpqfyc<-*
+k+ + F+A+V vL++ ++I ++++++++ +++++
H19N07.1 424 LAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEV 461
GTP_EFTU_D3: domain 2 of 2, from 507 to 572: score 74.4, E = 8.4e-20
*->vtgkidkltg.kvkevleegpemvmpGDnvivtvelikPiavEtFse
v+++idk+tg+k + ++v++ +++i+++e P ++E+F+e
H19N07.1 507 VIATIDKKTGeK------KRAKFVKQDEKCIMRLESPEPFVLEPFKE 547
YPpggRFAiREGGrTVGaGvVteil<-*
YP +gRF++R+ G+T+++G+V +++
H19N07.1 548 YPYLGRFTLRDEGKTIAIGKVLKVV 572