Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H20J04.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: H20J04.5 CE23815 status:Confirmed SW:Q9N5M2 protein_id:AAF39891.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
KE2 KE2 family protein 30.6 7.9e-07 1
Methylase_S Type I restriction modification DNA speci 4.1 5.3 1
MmgE_PrpD MmgE/PrpD family 3.7 3.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Methylase_S 1/1 15 29 .. 161 175 .] 4.1 5.3
KE2 1/1 17 124 .. 1 109 [] 30.6 7.9e-07
MmgE_PrpD 1/1 100 138 .. 433 473 .] 3.7 3.4
Alignments of top-scoring domains:
Methylase_S: domain 1 of 1, from 15 to 29: score 4.1, E = 5.3
*->eEQqkIasiLdqLDa<-*
eEQ k +++++ L +
H20J04.5 15 EEQRKVVEKFKALRD 29
KE2: domain 1 of 1, from 17 to 124: score 30.6, E = 7.9e-07
*->vqellaklqqlqqqlekvmtqkaqlerqLkEaelvleELekldeDtk
++ ++k+ l++q+++++ + e + +E vle + +l++D k
H20J04.5 17 QRKVVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQK 63
VYklVGkvLVkvqdkeeardeLeerleqleeeiktLekqeeylekeleel
+++l+ LV+ +++++ ++L+++++ l + k+L+ q+ ++ kel+ +
H20J04.5 64 CFRLISDTLVE-YTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGKELNTH 112
eeklqellqsaa<-*
++ ++ +l +++
H20J04.5 113 KTTHNIRLLTEK 124
MmgE_PrpD: domain 1 of 1, from 100 to 138: score 3.7, E = 3.4
*->ddlveKFrrllpglvdpvkqereliikraledaelesmlal<-*
d+lveK ++l++ + + r+l+ k++ e++ +e++ +l
H20J04.5 100 DQLVEKGKELNTHKTT--HNIRLLTEKESAELRKAEALGQL 138