Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H24G06.1a
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Query: H24G06.1a CE29976 status:Partially_confirmed TR:Q9UAQ2 protein_id:AAL32229.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 109.7 2.1e-29 10
SNF2_N SNF2 family N-terminal domain 4.7 2.5 1
SPK Domain of unknown function (DUF545) 3.9 9.4 1
DUF229 Protein of unknown function (DUF229) 2.3 6 1
myosin_head Myosin head (motor domain) 0.8 9.1 1
complex1_49Kd Respiratory-chain NADH dehydrogenase, 4 -0.0 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/10 112 150 .. 1 39 [] 11.0 0.25
DUF229 1/1 163 189 .. 529 561 .] 2.3 6
WD40 2/10 166 192 .. 11 39 .] 5.9 7.2
WD40 3/10 280 301 .. 15 39 .] 3.0 48
WD40 4/10 375 419 .. 1 39 [] 32.7 1.6e-07
WD40 5/10 472 500 .. 10 39 .] 4.2 22
WD40 6/10 506 552 .. 1 39 [] 26.9 7.3e-06
SPK 1/1 576 587 .. 104 115 .] 3.9 9.4
WD40 7/10 560 600 .. 1 39 [] 27.8 4.1e-06
WD40 8/10 621 648 .. 11 39 .] 0.9 1.8e+02
WD40 9/10 657 695 .. 1 39 [] 12.1 0.12
WD40 10/10 699 737 .. 1 39 [] 16.5 0.0068
myosin_head 1/1 1307 1320 .. 1 14 [. 0.8 9.1
SNF2_N 1/1 1393 1412 .. 335 356 .] 4.7 2.5
complex1_49Kd 1/1 1623 1630 .. 268 275 .] -0.0 8.2
Alignments of top-scoring domains:
WD40: domain 1 of 10, from 112 to 150: score 11.0, E = 0.25
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g ++++ + Ht ++t v+f pd ++l+s ++ + ++
H24G06.1a 112 GRLVRSMqSHTVSITIVRFTPD-DSTLISIGCQHDAQIFT 150
DUF229: domain 1 of 1, from 163 to 189: score 2.3, E = 6
*->kvvdriNellkelnteeElltplCapLeLqkVe<-*
k+++++N l+ +++ +++C+++ ++V+
H24G06.1a 163 KLMSPVNALTISFD------SSMCVTVGSKSVK 189
WD40: domain 2 of 10, from 166 to 192: score 5.9, E = 7.2
*->spvtcvafspdsgpylasgSrDgtiklWd<-*
spv+++ +s d ++++++ ++ +++k W
H24G06.1a 166 SPVNALTISFD-SSMCVTVGS-KSVKYWF 192
WD40: domain 3 of 10, from 280 to 301: score 3.0, E = 48
*->cvafspdsgpylasgSrDgtiklWd<-*
c+a +p+ l+ g++Dg ++l+
H24G06.1a 280 CIARVPE---GLLVGCSDGLVRLFC 301
WD40: domain 4 of 10, from 375 to 419: score 32.7, E = 1.6e-07
*->geclatl.gHtspvtcvafspd.....sgpylasgSrDgtiklWd<-
++ + gHt++v+c+ p++++ + +l++g++Dgti+ W+
H24G06.1a 375 WSFRRASlGHTGSVNCIEPFPSsspclPIGTLITGGSDGTIRFWN 419
*
H24G06.1a - -
WD40: domain 5 of 10, from 472 to 500: score 4.2, E = 22
*->tspvtcvafspdsgpylasgSrDgtiklWd<-*
+s+v c ++s+d g++l+ g + g +++ d
H24G06.1a 472 SSGVLCTRVSHD-GRMLIAGTATGMLYIVD 500
WD40: domain 6 of 10, from 506 to 552: score 26.9, E = 7.3e-06
*->geclatl.gHtspvtcvafspd.......sgpylasgSrDgtiklWd
+ ++++H + vt+++fs ++++++ +++ +lasg+rD+ ++++
H24G06.1a 506 TPIIDVInAHDHDVTSIDFSDHastsshdHPIFLASGGRDRFVHVFR 552
<-*
H24G06.1a - -
SPK: domain 1 of 1, from 576 to 587: score 3.9, E = 9.4
*->ckYtSnDGklkL<-*
+k++Sn+G+l L
H24G06.1a 576 IKFASNNGQLHL 587
WD40: domain 7 of 10, from 560 to 600: score 27.8, E = 4.1e-06
*->geclatl.gHtspvtcvafspd.sgpylasgSrDgtiklWd<-*
a+l+gH+s++ +++f+ ++++ +l ++ +D+++ +W+
H24G06.1a 560 FVHCAVLdGHQSAIKSIKFASNnGQLHLYTAASDRSLIIWK 600
WD40: domain 8 of 10, from 621 to 648: score 0.9, E = 1.8e+02
*->spvtcvafspdsgpylasgSrDgtiklWd<-*
s++ ++ f + +++ +++D+ ++ +d
H24G06.1a 621 SSIGDMNFIKH-VDLFVVAGHDRMLRQFD 648
[output cut off at A = 10 top alignments]