Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/H24G06.1a
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Query:  H24G06.1a  CE29976    status:Partially_confirmed TR:Q9UAQ2 protein_id:AAL32229.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
WD40          WD domain, G-beta repeat                  109.7    2.1e-29  10
SNF2_N        SNF2 family N-terminal domain               4.7        2.5   1
SPK           Domain of unknown function (DUF545)         3.9        9.4   1
DUF229        Protein of unknown function (DUF229)        2.3          6   1
myosin_head   Myosin head (motor domain)                  0.8        9.1   1
complex1_49Kd Respiratory-chain NADH dehydrogenase, 4    -0.0        8.2   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
WD40            1/10    112   150 ..     1    39 []    11.0     0.25
DUF229          1/1     163   189 ..   529   561 .]     2.3        6
WD40            2/10    166   192 ..    11    39 .]     5.9      7.2
WD40            3/10    280   301 ..    15    39 .]     3.0       48
WD40            4/10    375   419 ..     1    39 []    32.7  1.6e-07
WD40            5/10    472   500 ..    10    39 .]     4.2       22
WD40            6/10    506   552 ..     1    39 []    26.9  7.3e-06
SPK             1/1     576   587 ..   104   115 .]     3.9      9.4
WD40            7/10    560   600 ..     1    39 []    27.8  4.1e-06
WD40            8/10    621   648 ..    11    39 .]     0.9  1.8e+02
WD40            9/10    657   695 ..     1    39 []    12.1     0.12
WD40           10/10    699   737 ..     1    39 []    16.5   0.0068
myosin_head     1/1    1307  1320 ..     1    14 [.     0.8      9.1
SNF2_N          1/1    1393  1412 ..   335   356 .]     4.7      2.5
complex1_49Kd   1/1    1623  1630 ..   268   275 .]    -0.0      8.2

Alignments of top-scoring domains:
WD40: domain 1 of 10, from 112 to 150: score 11.0, E = 0.25
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      g ++++ + Ht ++t v+f pd  ++l+s ++ +   ++
   H24G06.1a   112    GRLVRSMqSHTVSITIVRFTPD-DSTLISIGCQHDAQIFT    150

DUF229: domain 1 of 1, from 163 to 189: score 2.3, E = 6
                   *->kvvdriNellkelnteeElltplCapLeLqkVe<-*
                      k+++++N l+ +++      +++C+++  ++V+
   H24G06.1a   163    KLMSPVNALTISFD------SSMCVTVGSKSVK    189

WD40: domain 2 of 10, from 166 to 192: score 5.9, E = 7.2
                   *->spvtcvafspdsgpylasgSrDgtiklWd<-*
                      spv+++ +s d ++++++ ++ +++k W
   H24G06.1a   166    SPVNALTISFD-SSMCVTVGS-KSVKYWF    192

WD40: domain 3 of 10, from 280 to 301: score 3.0, E = 48
                   *->cvafspdsgpylasgSrDgtiklWd<-*
                      c+a +p+    l+ g++Dg ++l+
   H24G06.1a   280    CIARVPE---GLLVGCSDGLVRLFC    301

WD40: domain 4 of 10, from 375 to 419: score 32.7, E = 1.6e-07
                   *->geclatl.gHtspvtcvafspd.....sgpylasgSrDgtiklWd<-
                      ++  +   gHt++v+c+   p++++  +  +l++g++Dgti+ W+
   H24G06.1a   375    WSFRRASlGHTGSVNCIEPFPSsspclPIGTLITGGSDGTIRFWN   419

                   *

   H24G06.1a     -   -

WD40: domain 5 of 10, from 472 to 500: score 4.2, E = 22
                   *->tspvtcvafspdsgpylasgSrDgtiklWd<-*
                      +s+v c ++s+d g++l+ g + g +++ d
   H24G06.1a   472    SSGVLCTRVSHD-GRMLIAGTATGMLYIVD    500

WD40: domain 6 of 10, from 506 to 552: score 26.9, E = 7.3e-06
                   *->geclatl.gHtspvtcvafspd.......sgpylasgSrDgtiklWd
                         + ++++H + vt+++fs ++++++ +++ +lasg+rD+ ++++
   H24G06.1a   506    TPIIDVInAHDHDVTSIDFSDHastsshdHPIFLASGGRDRFVHVFR 552

                   <-*

   H24G06.1a     -     -

SPK: domain 1 of 1, from 576 to 587: score 3.9, E = 9.4
                   *->ckYtSnDGklkL<-*
                      +k++Sn+G+l L
   H24G06.1a   576    IKFASNNGQLHL    587

WD40: domain 7 of 10, from 560 to 600: score 27.8, E = 4.1e-06
                   *->geclatl.gHtspvtcvafspd.sgpylasgSrDgtiklWd<-*
                          a+l+gH+s++ +++f+ ++++ +l ++ +D+++ +W+
   H24G06.1a   560    FVHCAVLdGHQSAIKSIKFASNnGQLHLYTAASDRSLIIWK    600

WD40: domain 8 of 10, from 621 to 648: score 0.9, E = 1.8e+02
                   *->spvtcvafspdsgpylasgSrDgtiklWd<-*
                      s++ ++ f  +   +++ +++D+ ++ +d
   H24G06.1a   621    SSIGDMNFIKH-VDLFVVAGHDRMLRQFD    648

	[output cut off at A = 10 top alignments]


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