Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H28O16.1
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Query: H28O16.1 CE18826 ATP synthase alpha and beta subunits, ATP synthase Alpha chain, C terminal status:Confirmed TR:Q9XXK1 protein_id:CAA1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ATP-synt_ab ATP synthase alpha/beta family, nucleot 376.3 3e-109 1
ATP-synt_ab_C ATP synthase alpha/beta chain, C termin 146.4 5.7e-41 1
ATP-synt_ab_N ATP synthase alpha/beta family, beta-ba 67.3 2.7e-21 1
MOZ_SAS MOZ/SAS family 4.5 3.4 1
Bac_GDH Bacterial NAD-glutamate dehydrogenase -0.1 8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ATP-synt_ab_N 1/1 52 120 .. 1 69 [] 67.3 2.7e-21
Bac_GDH 1/1 298 312 .. 1619 1633 .] -0.1 8
MOZ_SAS 1/1 313 322 .. 1 10 [. 4.5 3.4
ATP-synt_ab 1/1 224 406 .. 1 187 [] 376.3 3e-109
ATP-synt_ab_C 1/1 408 516 .. 1 147 [] 146.4 5.7e-41
Alignments of top-scoring domains:
ATP-synt_ab_N: domain 1 of 1, from 52 to 120: score 67.3, E = 2.7e-21
*->ivqviGpVvdVefgigrlpgiynalevelvefgklvlgvvlnLgddk
+++G V+++++gi+r++g+ n+ + e+vef ++++g++ nL+ d+
H28O16.1 52 NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDN 98
VrivvmgsTdGlkrGdeVkdTG<-*
V++vv+g + +++Gd Vk+TG
H28O16.1 99 VGVVVFGNDKVIREGDIVKRTG 120
Bac_GDH: domain 1 of 1, from 298 to 312: score -0.1, E = 8
*->DlAtLSVAnrelrqL<-*
Dl++ +VA r+++ L
H28O16.1 298 DLSKQAVAYRQMSLL 312
MOZ_SAS: domain 1 of 1, from 313 to 322: score 4.5, E = 3.4
*->lrhPPGnEIY<-*
lr+PPG+E Y
H28O16.1 313 LRRPPGREAY 322
ATP-synt_ab: domain 1 of 1, from 224 to 406: score 376.3, E = 3e-109
*->eeadvvVyvlIGeRgrEvaefveelleegalktglmrtvlVaatade
+++ ++yv++G+++++va++v++l ++ga++ +t++V ata++
H28O16.1 224 KKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMD----YTIVVSATASD 266
pallRylapytattiAEYFrdqGkdVLliiDsltRfAqAlREiSlllgep
+a+l++lapy++++++E+Frd+Gk++L+i+D+l+++A+A+R++Slll++p
H28O16.1 267 AAPLQFLAPYSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRP 316
PgreGYPpdvfyllsrLlERAGklsdeggkGSITalptVltegdDisdPi
Pgre+YP+dvfyl+srLlERA+k++++ g+GS+Talp+++t+++D+s++i
H28O16.1 317 PGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYI 366
pdnvisItDGqIvLsreLaerGiyPAIdvllSvSRvgsaa<-*
p+nvisItDGqI+L++eL+++G++PAI+v+lSvSRvgsaa
H28O16.1 367 PTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAA 406
ATP-synt_ab_C: domain 1 of 1, from 408 to 516: score 146.4, E = 5.7e-41
*->gkahkqVagklkleLaqyrELqafaQlvGsDeLseeDKltQQLerAr
ka+kqVag++kleLaqyrE++afaQ +GsD L++ ++ + L+r+
H28O16.1 408 TKAMKQVAGSMKLELAQYREVAAFAQ-FGSD-LDASTQQL--LNRGV 450
rieedfLkQnqyspeDvFcpvekqyvsLrnIiFYdeAqkAleGvtlnkIv
r++e +LkQ+qy+p+ +
H28O16.1 451 RLTE-LLKQGQYVPM-----------G----------------------I 466
eetidlfyallrGklddlpedalekigtidiakykalnkellekakkllk
ee++ ++ya+++G+ld + +a+ k++++++a++++++++ll+++++ ++
H28O16.1 467 EEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQ 516
<-*
H28O16.1 - -