Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H30A04.1a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: H30A04.1a CE18828 locus:eat-20 EGF-like domain (3 domains) status:Confirmed TR:Q9XXU1 protein_id:CAA15516.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EGF EGF-like domain 68.8 9.6e-18 3
DSL Delta serrate ligand 3.9 8.1 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSL 1/2 246 256 .. 57 67 .] 3.3 12
EGF 1/3 224 256 .. 1 45 [] 32.9 1.4e-07
EGF 2/3 261 292 .. 1 45 [] 25.9 1.3e-05
DSL 2/2 325 334 .. 58 67 .] 0.9 67
EGF 3/3 305 334 .. 1 45 [] 25.9 1.3e-05
Alignments of top-scoring domains:
DSL: domain 1 of 2, from 246 to 256: score 3.3, E = 12
*->lCleGWkGeyC<-*
lC +G +G+ C
H30A04.1a 246 LCRNGFTGDRC 256
EGF: domain 1 of 3, from 224 to 256: score 32.9, E = 1.4e-07
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
Ca + C+n+GtC+ + + g tC C +G +tG+rC
H30A04.1a 224 CANH-ECHNNGTCLVSQE------GAATCLCRNG-----FTGDRC 256
*
H30A04.1a - -
EGF: domain 2 of 3, from 261 to 292: score 25.9, E = 1.3e-05
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C++ pC+ngG+C++ g +CeCpp +tG C
H30A04.1a 261 CSSV-PCQNGGVCRSNNG-------IAYCECPPA-----FTGLLC 292
*
H30A04.1a - -
DSL: domain 2 of 2, from 325 to 334: score 0.9, E = 67
*->CleGWkGeyC<-*
C G +G +C
H30A04.1a 325 CRQGFTGANC 334
EGF: domain 3 of 3, from 305 to 334: score 25.9, E = 1.3e-05
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C p Csn G+Cv g +CeC +G +tG +C
H30A04.1a 305 CRP--ECSN-GQCVFKDG-------QAQCECRQG-----FTGANC 334
*
H30A04.1a - -