hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/H31G24.4
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Query:  H31G24.4  CE23835  locus:cyb-2.2 cyclin status:Partially_confirmed TR:Q9BLB5 protein_id:AAK21417.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
cyclin   Cyclin, N-terminal domain                      184.3    1.9e-51   1
cyclin_C Cyclin, C-terminal domain                       80.7    1.7e-20   1
UL25     Herpesvirus UL25 family                          2.3        9.7   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
cyclin     1/1      56   181 ..     1   146 []   184.3  1.9e-51
UL25       1/1     256   269 ..   582   597 .]     2.3      9.7
cyclin_C   1/1     183   319 ..     1   136 []    80.7  1.7e-20

Alignments of top-scoring domains:
cyclin: domain 1 of 1, from 56 to 181: score 184.3, E = 1.9e-51
                   *->diyaylrelEeeflplpppdyldqqpqpdsiditpkmRaiLidWLve
                      diy+yl + E+++    +  +++  +      +++kmR+iL+dWLv+
    H31G24.4    56    DIYNYLVHHEKKY--VLDDSFINGGN------VNSKMRRILVDWLVQ 94

                   VhekfkLspeTLyLavnylDRFLskkkfpklkvkrkklQLvgvtclfiAs
                   Vh +f+L+peTL+L++  lDR   k+      v++ ++QL+gv++lf+As
    H31G24.4    95 VHLRFHLTPETLHLTIFVLDRIIVKN-I----VSKAEFQLLGVAALFVAS 139

                   KyEEiksdvypPsvkdfvyitasDnqaytkeeilrMEkliLktLkfdls<
                   K+E+i    y P + ++  it  +n +++k++il ME+ iL++L+fdls
    H31G24.4   140 KFEDI----YLPDILEYELIT--EN-TFSKKQILAMEQTILNALNFDLS  181

                   -*

    H31G24.4     -    -

UL25: domain 1 of 1, from 256 to 269: score 2.3, E = 9.7
                   *->PrtaLareiissQFnV<-*
                      P+ta    +i++QF++
    H31G24.4   256    PKTA--ASMIRKQFGA    269

cyclin_C: domain 1 of 1, from 183 to 319: score 80.7, E = 1.7e-20
                   *->PTPysFLrrflkaaqlkdksP....vdaeeltlakyLlELslmdydf
                      P  ++FLr+++k + ++d +P +++    +++ +k+L EL+l+d+ +
    H31G24.4   183    PSSLVFLRYISKTLTENDVNPidkeTFYYVHNISKCLGELALLDSVM 229

                   flkylPSliAAaAvylArctLnksssGnnppWtetLehytglq..Yseed
                       + S +A+a++   ++++  +        ++t +    +q + s+ d
    H31G24.4   230 -STVPRSHVASASMIITLNIISVDG-----INPKTAASMIRKQfgASKQD 273

                   lkpCvkllvelhlna.ptsklkavreKYssskfgkvssltppsssl<-*
                   + + + ll+++++++ + +kl a+reKY+sskfg+vs l+++++++
    H31G24.4   274 IYDAISLLAQVAYKNfRHQKLCAIREKYQSSKFGRVSYLMTDEILE    319

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