Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K01A11.4
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Query: K01A11.4 CE03452 locus:spe-41 calmodulin-binding trp1 like protein status:Partially_confirmed TR:Q21070 protein_id:CAA91343.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ion_trans Ion transport protein 63.7 4.3e-16 1
ank Ankyrin repeat 21.4 0.00027 1
Basic Myogenic Basic domain 6.4 1.3 1
DUF537 Protein of unknown function, DUF537 3.8 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/1 142 174 .. 1 33 [] 21.4 0.00027
Basic 1/1 179 190 .. 104 115 .] 6.4 1.3
ion_trans 1/1 397 630 .. 1 228 [] 63.7 4.3e-16
DUF537 1/1 651 670 .. 96 115 .] 3.8 9.8
Alignments of top-scoring domains:
ank: domain 1 of 1, from 142 to 174: score 21.4, E = 0.00027
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+TPL+lA+ +n ++v++L+ rG ++ ++
K01A11.4 142 PHMTPLMLACILNNFSIVQCLITRGHCIQIPHF 174
Basic: domain 1 of 1, from 179 to 190: score 6.4, E = 1.3
*->CKaCKRKsvsvD<-*
CK+CKR +v++
K01A11.4 179 CKTCKRETVTTH 190
ion_trans: domain 1 of 1, from 397 to 630: score 63.7, E = 4.3e-16
*->ileildyvftviFtlEmllkiialgfklhsriprkYlrspwnilDfl
+lei+ y++++ ++lE + ++ g + ++ +w ++D +
K01A11.4 397 ALEIFMYAYVMGLALEKGILFYRVG-------RDGFFAFWWRWFDAA 436
vvlpslislilflsgggsv.kl.ir.l...res.l.flalse.vsygils
++ ++l+sli+f+ ++g++++++ ++++ ++++++f+ l+e l+
K01A11.4 437 LIFIFLFSLIFFTGKWGKReAFdPSsVdrmHWPsFeFSLLHEiC----LA 482
vlrllRllRvLRllrllrrapglfefelrtlGWklqslg.rslkslfnll
++ +l +l+ +++++++++ ++ ++s+g+ +k ++l
K01A11.4 483 IACVLSILK---CFYYAQMMKS-----IGGS---VISVGkCVGKTYTYIL 521
lllllllfifaiigvqlfggelnkcc......npingntnFdnfgeaflw
++++++++ f++++ ++ +ln++ + ++ + + +++++++g++
K01A11.4 522 IMVAIIVS-FSVGLNIIVDPYLNRSTmkigdqDYTKTTDSYETIGTSSKN 570
lFqtlTteGwgdimpdtl...............agtvlgkiyfvifiilg
lF+++++ g + +t+ ++++++ ++ +++ ++++++++ + ++ +
K01A11.4 571 LFWSIFGY-LGPSTFTTVvgntgpnmdpvkhtlNSSTFEILAA-VYHGIL 618
gflllNlfiavi<-*
++ +lNl ++
K01A11.4 619 IITVLNLMTSIL 630
DUF537: domain 1 of 1, from 651 to 670: score 3.8, E = 9.8
*->kilvdillWaldNppPanlm<-*
+i++++l+W + ppP nl+
K01A11.4 651 AIYSEFLSWEMAAPPPLNLI 670