Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K01A11.4
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Query:  K01A11.4  CE03452  locus:spe-41 calmodulin-binding trp1 like protein status:Partially_confirmed TR:Q21070 protein_id:CAA91343.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
ion_trans Ion transport protein                          63.7    4.3e-16   1
ank       Ankyrin repeat                                 21.4    0.00027   1
Basic     Myogenic Basic domain                           6.4        1.3   1
DUF537    Protein of unknown function, DUF537             3.8        9.8   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
ank         1/1     142   174 ..     1    33 []    21.4  0.00027
Basic       1/1     179   190 ..   104   115 .]     6.4      1.3
ion_trans   1/1     397   630 ..     1   228 []    63.7  4.3e-16
DUF537      1/1     651   670 ..    96   115 .]     3.8      9.8

Alignments of top-scoring domains:
ank: domain 1 of 1, from 142 to 174: score 21.4, E = 0.00027
                   *->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
                        +TPL+lA+  +n ++v++L+ rG ++ ++
    K01A11.4   142    PHMTPLMLACILNNFSIVQCLITRGHCIQIPHF    174

Basic: domain 1 of 1, from 179 to 190: score 6.4, E = 1.3
                   *->CKaCKRKsvsvD<-*
                      CK+CKR +v++
    K01A11.4   179    CKTCKRETVTTH    190

ion_trans: domain 1 of 1, from 397 to 630: score 63.7, E = 4.3e-16
                   *->ileildyvftviFtlEmllkiialgfklhsriprkYlrspwnilDfl
                      +lei+ y++++ ++lE  + ++  g       +  ++  +w ++D +
    K01A11.4   397    ALEIFMYAYVMGLALEKGILFYRVG-------RDGFFAFWWRWFDAA 436

                   vvlpslislilflsgggsv.kl.ir.l...res.l.flalse.vsygils
                   ++ ++l+sli+f+ ++g++++++  ++++ ++++++f+ l+e      l+
    K01A11.4   437 LIFIFLFSLIFFTGKWGKReAFdPSsVdrmHWPsFeFSLLHEiC----LA 482

                   vlrllRllRvLRllrllrrapglfefelrtlGWklqslg.rslkslfnll
                   ++ +l +l+    +++++++++     ++     ++s+g+  +k   ++l
    K01A11.4   483 IACVLSILK---CFYYAQMMKS-----IGGS---VISVGkCVGKTYTYIL 521

                   lllllllfifaiigvqlfggelnkcc......npingntnFdnfgeaflw
                   ++++++++ f++++ ++   +ln++  + ++ +  + +++++++g++
    K01A11.4   522 IMVAIIVS-FSVGLNIIVDPYLNRSTmkigdqDYTKTTDSYETIGTSSKN 570

                   lFqtlTteGwgdimpdtl...............agtvlgkiyfvifiilg
                   lF+++++   g  + +t+ ++++++ ++ +++ ++++++++ + ++  +
    K01A11.4   571 LFWSIFGY-LGPSTFTTVvgntgpnmdpvkhtlNSSTFEILAA-VYHGIL 618

                   gflllNlfiavi<-*
                   ++ +lNl   ++
    K01A11.4   619 IITVLNLMTSIL    630

DUF537: domain 1 of 1, from 651 to 670: score 3.8, E = 9.8
                   *->kilvdillWaldNppPanlm<-*
                      +i++++l+W +  ppP nl+
    K01A11.4   651    AIYSEFLSWEMAAPPPLNLI    670



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