Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K01C8.9
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Query: K01C8.9 CE02270 GTP-binding protein status:Confirmed TR:Q21086 protein_id:CAA88860.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MMR_HSR1 GTPase of unknown function 365.0 7.9e-106 1
FeoB Ferrous iron transport protein B 20.2 2.7e-05 1
DUF327 Protein of unknown function (DUF327) 5.6 3.8 1
DCX Doublecortin 4.9 5.8 1
LTV Low temperature viability protein 4.6 2.9 1
Orbi_VP4 Orbivirus VP4 core protein 3.9 2.7 1
Nuclease S1/P1 Nuclease 3.8 2.6 1
Flu_PB2 Influenza RNA-dependent RNA polymerase subun 1.9 7.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LTV 1/1 69 94 .. 486 511 .] 4.6 2.9
Nuclease 1/1 168 191 .. 292 315 .] 3.8 2.6
Orbi_VP4 1/1 194 202 .. 643 651 .] 3.9 2.7
FeoB 1/1 264 314 .. 1 53 [. 20.2 2.7e-05
Flu_PB2 1/1 295 322 .. 505 532 .. 1.9 7.7
DCX 1/1 359 388 .. 1 35 [. 4.9 5.8
MMR_HSR1 1/1 137 413 .. 1 304 [] 365.0 7.9e-106
DUF327 1/1 514 534 .. 1 21 [. 5.6 3.8
Alignments of top-scoring domains:
LTV: domain 1 of 1, from 69 to 94: score 4.6, E = 2.9
*->reekekrKsaleeldkeRrvekrARe<-*
re+++ r++a++e k+ r+ekr +
K01C8.9 69 REKIKVRQEAAKEAAKIHRIEKRKNN 94
Nuclease: domain 1 of 1, from 168 to 191: score 3.8, E = 2.6
*->VekRlAqGGvRLAaiLNrifsses<-*
Ve ++++GG+RL LN i ++
K01C8.9 168 VEDQVLKGGKRLVLLLNKIDLVPR 191
Orbi_VP4: domain 1 of 1, from 194 to 202: score 3.9, E = 2.7
*->VesWldyLR<-*
V++Wl+yLR
K01C8.9 194 VQKWLEYLR 202
FeoB: domain 1 of 1, from 264 to 314: score 20.2, E = 2.7e-05
*->LvGNPNVGKSTLFNAL.TGanqkVGNWPGVTVEKKeGklkykGedie
+vG PNVGKS+ +N L+ ++ VGN PG T E+ e++l ++ i
K01C8.9 264 VVGFPNVGKSSVINSLkRRKACNVGNLPGITKEIQEVEL---DKNIR 307
ivDLPGi<-*
++D PG+
K01C8.9 308 LIDSPGV 314
Flu_PB2: domain 1 of 1, from 295 to 322: score 1.9, E = 7.7
*->tErikvsidrnLrvrdqsGnVllsiedv<-*
+E v++d+n r++d+ G +l s d+
K01C8.9 295 KEIQEVELDKNIRLIDSPGVILVSQKDL 322
DCX: domain 1 of 1, from 359 to 388: score 4.9, E = 5.8
*->lvlnrrrdvksfdalLedLtr.vTeviklptGaAvr<-*
l +n ++s d++L +L r+++ l++G +r
K01C8.9 359 LHYNLAD-FNSVDQFLAQLARrIGK---LRRG--AR 388
MMR_HSR1: domain 1 of 1, from 137 to 413: score 365.0, E = 7.9e-106
*->alkqvkkvieeaDvileVvDARdPlssrnpelekyvkkkpkKklILV
+ +v+k +e aDvi++V+DARdPl+sr++ +e++v+k +k +l+L+
K01C8.9 137 YASEVRKTVEIADVIIQVLDARDPLGSRSKSVEDQVLKGGK-RLVLL 182
lNKaDlapkseevveewkkygekegptisakhasg...gllkkdvskalq
lNK+Dl+p+ e+v++w++y+++++pti +k ++++++ ++++++s++l+
K01C8.9 183 LNKIDLVPR--ENVQKWLEYLRGQFPTIAFKASTQeqkSNIGRFNSAILN 230
peeqg.leeaiallesLkeegdkpeievqPgpqpkkksirVgviGyPNVG
+ e++++++a++++++L ++++++ i k+sirVgv+G+PNVG
K01C8.9 231 NTETSkCVGADIVMKILANYCRNKDI---------KTSIRVGVVGFPNVG 271
KSSLINaLvgkkrkskpaiVsnrPGtTrdiqeiklkhkdkkieLiDTPGi
KSS+IN+L ++k+ ++V+n PG+T++iqe+ l dk+i+LiD+PG+
K01C8.9 272 KSSVINSLKRRKA----CNVGNLPGITKEIQEVEL---DKNIRLIDSPGV 314
rfpssvdesvgkdelkLaltgvirtekviepadavlllidllekysdeqd
++ s++d + ++al+++ir++++++p+ +v++++++++k++ +++
K01C8.9 315 ILVSQKDLDP----IEVALKNAIRVDNLLDPIAPVHAILRRCSKET-IML 359
ekiaglieipreeededellviiaknrgdLlkkggepdlnraakivlkdf
++ + ++ + d +l+ +a++ g+L++ g +pd+n aak vl+d+
K01C8.9 360 HYNLADFN------SVDQFLAQLARRIGKLRR-GARPDVNAAAKRVLNDW 402
rtGklgwvtlp<-*
+tGkl ++t+p
K01C8.9 403 NTGKLRYYTHP 413
DUF327: domain 1 of 1, from 514 to 534: score 5.6, E = 3.8
*->MkVnnliktsLknkevdskKs<-*
n+likt++k ++++skK+
K01C8.9 514 VQLNKLIKTAIKKQKKKSKKT 534