hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K01C8.10
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Query:  K01C8.10  CE02262  locus:cct-4 T-complex protein status:Confirmed SW:P47208 protein_id:CAA88861.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
cpn60_TCP1 TCP-1/cpn60 chaperonin family                648.1   4.8e-191   1
SWIRM      SWIRM domain                                   4.2          9   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SWIRM        1/1     247   260 ..    91   104 .]     4.2        9
cpn60_TCP1   1/1      43   540 .]     1   533 []   648.1 4.8e-191

Alignments of top-scoring domains:
SWIRM: domain 1 of 1, from 247 to 260: score 4.2, E = 9
                   *->GlINygisskikpl<-*
                      GlI+++is+ ++++
    K01C8.10   247    GLIQFQISPPKTDM    260

cpn60_TCP1: domain 1 of 1, from 43 to 540: score 648.1, E = 4.8e-191
                   *->ladivkttLGPkGrnKmlvngsyGditiTnDGaTIlkeielqhPyen
                      +ad+v+t+LGP+G++Km+++g+ Gd+tiTnDGaTIl+ +++ hP
    K01C8.10    43    VADAVRTSLGPRGMDKMIQSGN-GDVTITNDGATILNQMSVIHP--- 85

                   lgAkllveaskkQddevGDGTTtvvvLageLLkeaekLinaGlhPtqIir
                    +Ak+lve+sk Qd e+GDGTTtvvv+ag+LL  a++L+ +G+hPt I +
    K01C8.10    86 -TAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISE 134

                   GyelAaekaleaLkklsipvetndkinkeellkvAktslnsKvisgnsia
                   ++  Aa +a ++L+++s+pv+ +   n   l k A+tslnsKv+s++s +
    K01C8.10   135 SFQSAAAEAEKILDEMSSPVDLS---NDALLNKMATTSLNSKVVSQHSWL 181

                   dAlakvgvdavitveeekndkysfdldnievvkglGgsifdsglisGyvi
                     la+++v+av+++ +++nd  +++l +i+++k++G ++++s+li+G  i
    K01C8.10   182 --LAPMAVNAVKKIINSENDS-NVNLKMIKIIKKMGDTVEESELIEGALI 228

                   tkeerhpvelempkrlendaKIavlncpLeiLelktetkkrplviiasde
                   + ++ +    + p+r+e+ aKI ++++ ++  ++kt ++    vii++++
    K01C8.10   229 DQKTMGR---GAPTRIEK-AKIGLIQFQIS--PPKTDME--NQVIITDYA 270

                   dleaLstlEenklkgkvkviavkgpnvvitqke....gidDiAlhtladt
                   ++++ +++E+ +l +++k+i+++g+nv + qk+  +++++++Alh+la
    K01C8.10   271 QMDRALKEERQYLLEICKQIKAAGCNVLLIQKSilrdAVNELALHFLA-- 318

                   visdkagIlalrrvskedlgrlakvlgakvvttligpgagsedeeeiGer
                       k++I++++++++ed+++ +++lg+++v+++++ +     ++ +G++
    K01C8.10   319 ----KMKIMCIKDIEREDIEFYSRILGCRPVASVDHFN-----ADALGYA 359

                   devleeeigestsddkktkleerkarLsgkvatIllRGateveldElerr
                   d v+e+  g+   d k+ k++++ +   g++++IllRG+++++l+E+ r+
    K01C8.10   360 DLVEEIPTGG---DGKVIKVTGVQN--PGHAVSILLRGSNKLVLEEADRS 404

                   ieDAlnavkaaiedgriVPGGGaaEielakaLdkykakslegkeqlavea
                   i+DAl++++++++ ++++PGGGa E+e+a++L++  a++  g  q++ +a
    K01C8.10   405 IHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNL-AQTQHGATQYCWRA 453

                   fakALeviPkiLAeNAGldgidviskLraehakGnsDlknyGidaatgki
                   fa+ALe iP++LAeNAGl++i ++++Lr++ha+Gn    +yG+++++g +
    K01C8.10   454 FADALELIPYTLAENAGLSPIHTVTELRNNHANGN---SSYGVNVRKGYV 500

                   vdmveaGIiDplkVkrqalklAteaAsliLtiDdiImakp<-*
                    dmve +++ pl V+++a+k+A+e++  iL+iDdi+ma +
    K01C8.10   501 TDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIVMAVR    540

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