Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K01C8.3b
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Query: K01C8.3b CE28344 aromatic-L-amino-acid decarboxylase status:Partially_confirmed TR:Q95ZS2 protein_id:CAC42319.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pyridoxal_deC Pyridoxal-dependent decarboxylase conse 687.0 9.5e-203 1
DUF137 Protein of unknown function DUF137 7.1 0.61 1
XH XH domain 5.6 1.7 1
MutS_II MutS domain II 4.0 6.4 1
Keratin_B2 Keratin, high sulfur B2 protein 3.2 6.4 1
Nnf1 Nnf1 1.9 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF137 1/1 87 102 .. 178 193 .] 7.1 0.61
XH 1/1 87 104 .. 130 147 .] 5.6 1.7
MutS_II 1/1 93 110 .. 137 156 .] 4.0 6.4
Keratin_B2 1/1 322 338 .. 1 19 [. 3.2 6.4
pyridoxal_deC 1/1 111 489 .. 1 399 [] 687.0 9.5e-203
Nnf1 1/1 645 676 .. 1 35 [. 1.9 4.6
Alignments of top-scoring domains:
DUF137: domain 1 of 1, from 87 to 102: score 7.1, E = 0.61
*->kEvlelIaeRLknlel<-*
kE++++I +L+n+++
K01C8.3b 87 KETVDYIVDYLENIQK 102
XH: domain 1 of 1, from 87 to 104: score 5.6, E = 1.7
*->kEvvkyllnqlkalkrkR<-*
kE v+y+++ l+++ ++R
K01C8.3b 87 KETVDYIVDYLENIQKRR 104
MutS_II: domain 1 of 1, from 93 to 110: score 4.0, E = 6.4
*->LlsYlketqkeDsdnlphle<-*
++ Yl+ qk+ +++p++e
K01C8.3b 93 IVDYLENIQKR--RVVPAIE 110
Keratin_B2: domain 1 of 1, from 322 to 338: score 3.2, E = 6.4
*->qtScCGfptCStlgtrPsC<-*
+tScC f + S+ g P C
K01C8.3b 322 TTSCCSFDVLSEIG--PIC 338
pyridoxal_deC: domain 1 of 1, from 111 to 489: score 687.0, E = 9.5e-203
*->PgylrpllpeaaPikpeslldileDieknimpGvthWhsPnfhayfp
Pgyl+ l+p +aP pes+++++eD ek impG+thW++P+fhayfp
K01C8.3b 111 PGYLKDLIPSEAPNTPESFESVMEDFEKLIMPGITHWQHPRFHAYFP 157
agnSypslLGdmLsdaINcngFtwessPAcTELEvvvmdwlgkmlglPke
agnS+ps+ +dmLsdaI+c+gF+w++ PA TELE++++dw+gkm+glP+e
K01C8.3b 158 AGNSFPSIIADMLSDAIGCVGFSWAACPAMTELELIMLDWFGKMIGLPAE 207
flgssg.sqGGGvlqgggSESnLlallAARtkwlrrmkargkpldeseIl
fl ++++GGGv+q+++SE n+++llAAR + +++ +r + e+ +l
K01C8.3b 208 FLPLTEnGKGGGVIQSSASECNFVTLLAARFEVMKELRQRFPFVEEGLLL 257
gKLVlYtSdqaHsSvmeKaakiagVktdnlrlipsdedngkmrgddLeka
KL +Y+S+ aHsSv eKa+ i++Vk lr +++d ++++rgd+L++a
K01C8.3b 258 SKLIAYCSKEAHSSV-EKACMIGMVK---LRILETDS-KFRLRGDTLRNA 302
IeedkerGLiPffVcATlGTTvsgaFDnlqelgdicaklgietGydlWlH
I ed GLiPffV TlGTT++++FD l+e+g+ic++ lWlH
K01C8.3b 303 IQEDRNLGLIPFFVSTTLGTTSCCSFDVLSEIGPICKE------NELWLH 346
VDAAyaGsAfIcPefRhplewlfGiEraDSisfnPHKwmlvlldCsalwv
VDAAy+GsAfIcPefR+ +++GiE+a S+++nP Kw+l ++dCs++wv
K01C8.3b 347 VDAAYSGSAFICPEFRP---LMNGIEYAMSFNTNPNKWLLINFDCSTMWV 393
KdksaLqdalsvnpeYLkhndkqsdvavDfktwqIplSRgnrfriLKlWf
+d+ +L++al+v+p+YL+h+ d++ D+++w+IplSR rfr+LKlWf
K01C8.3b 394 RDRFKLTQALVVDPLYLQHSW--MDKSIDYRHWGIPLSR--RFRSLKLWF 439
vlRsyGveglqnhIrehvelAkyfedlvrkdgrdFeivadpernlglVcF
v+R+yG+ glq++Irehv+lAk++e l+r+d Feiv+ e+++glVcF
K01C8.3b 440 VIRMYGIDGLQKYIREHVRLAKKMETLLRADAK-FEIVN--EVIMGLVCF 486
rlK<-*
r K
K01C8.3b 487 RMK 489
Nnf1: domain 1 of 1, from 645 to 676: score 1.9, E = 4.6
*->MvssHGiRkirLdavlsRaLdesIaklqsldKvas<-*
M + Rk d R+L ++I++ q +++++
K01C8.3b 645 MAN---HRKMSQDLYRDRTLMQTISHSQRPNRLSQ 676