Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K01G5.6
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Query: K01G5.6 CE16196 locus:rib-2 MULTIPLE EXOSTOSES HOMOLOG 2 status:Confirmed SW:O01705 protein_id:CAB07245.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Exostosin Exostosin family 30.7 4.6e-08 1
Ribosomal_LX Ribosomal LX protein 4.7 5.2 1
NAD_kinase ATP-NAD kinase 2.6 5.2 1
APG6 Autophagy protein Apg6 2.0 7.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_LX 1/1 90 98 .. 48 56 .] 4.7 5.2
APG6 1/1 114 135 .. 140 161 .. 2.0 7.9
Exostosin 1/1 318 411 .. 302 407 .] 30.7 4.6e-08
NAD_kinase 1/1 488 506 .. 269 286 .] 2.6 5.2
Alignments of top-scoring domains:
Ribosomal_LX: domain 1 of 1, from 90 to 98: score 4.7, E = 5.2
*->skIkIeEIk<-*
s++kIeEI+
K01G5.6 90 SQVKIEEIR 98
APG6: domain 1 of 1, from 114 to 135: score 2.0, E = 7.9
*->eldslelqieysqaqLdKLrKt<-*
el +le +ie +q+qL+ Lr t
K01G5.6 114 ELSALEGEIEAAQRQLEELRET 135
Exostosin: domain 1 of 1, from 318 to 411: score 30.7, E = 4.6e-08
*->CetgivnchgpldymelmrnStFCLqlPpGdrptspRlfDailaGCI
C++++++ ++ ++l+ +StFC p ++ ++ ++++GCI
K01G5.6 318 CSQENCSLERR---RQLIGSSTFCFL-LPS-EMFFQDFLSSLQLGCI 359
PViisDgSAYiqLPFsdvlDwskfSVfvpekdvlergvslkeiLrsIpee
P i+s++ LPF+d +Dw+++ +p +++e ++i++s+ +
K01G5.6 360 PIILSNS---QLLPFQDLIDWRRATYRLPLARLPE----AHFIVQSFEIS 402
rilemreqv<-*
+i emr+ +
K01G5.6 403 DIIEMRRVG 411
NAD_kinase: domain 1 of 1, from 488 to 506: score 2.6, E = 5.2
*->pyslkfirlskk.ksFfki<-*
+y+++f +++ ++++F++i
K01G5.6 488 SYAYNFTEFQLYsYDFWNI 506