Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K02B12.7
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Query: K02B12.7 CE11618 ADP-ribosylation factor 1-directed GTPase activating protein status:Partially_confirmed TR:P90904 protein_id:CAB00036
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ArfGap Putative GTP-ase activating protein for Arf 215.9 1.8e-62 1
Rhomboid Rhomboid family 3.6 8.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ArfGap 1/1 7 124 .. 1 138 [] 215.9 1.8e-62
Rhomboid 1/1 193 224 .. 112 161 .] 3.6 8.9
Alignments of top-scoring domains:
ArfGap: domain 1 of 1, from 7 to 124: score 215.9, E = 1.8e-62
*->qrvlklLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
+rvlk+Lr++d +N+ Cf+C a nP+W+Sv++G+++C+eCSGiHR+
K02B12.7 7 RRVLKELRPCD-DNNFCFECEA-NNPQWVSVSYGIWICLECSGIHRS 51
LfGvHiSkVnvRSltLDtWtpeeLrklesckgGNenansfwEsnlddfsl
L GvH+S+V RS+t+D+W+++eL k++ +gGN+++++f++s+ d+ ++
K02B12.7 52 L-GVHLSFV--RSVTMDKWKDIELAKMK--AGGNRKFAEFLQSQPDYKEK 96
kpkdsdaaavKCqddrqkyesfiaaKYeeklfrvlkeskee<-*
++ +++ky+s++aa +++k + +++e++e+
K02B12.7 97 WT------------IQEKYNSRAAALFRDKVA-CEAEGREW 124
Rhomboid: domain 1 of 1, from 193 to 224: score 3.6, E = 8.9
*->glsllpgisnfapglaggavagsgqvayaAHlgGflaGlllgfillr
g+ +p+ sn++ l+G+++Gl +g+ +l+
K02B12.7 193 GY--VPNQSNSGDD----------------LLAGAMSGLSMGWSMLS 221
rpr<-*
+
K02B12.7 222 KGA 224