Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K02D10.1a
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Query:  K02D10.1a  CE17151   4-NITROPHENYLPHOSPHATASE status:Partially_confirmed SW:P34492 protein_id:AAK84537.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
Hydrolase haloacid dehalogenase-like hydrolase           66.6    9.2e-17   1
DUF695    Family of unknown function (DUF695)             1.3        6.4   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
DUF695      1/1      97   105 ..   237   245 ..     1.3      6.4
Hydrolase   1/1      15   259 ..     1   175 [.    66.6  9.2e-17

Alignments of top-scoring domains:
DUF695: domain 1 of 1, from 97 to 105: score 1.3, E = 6.4
                   *->AeqFSGEYv<-*
                      A++FSGEYv
   K02D10.1a    97    ADKFSGEYV    105

Hydrolase: domain 1 of 1, from 15 to 259: score 66.6, E = 9.2e-17
                   *->ikavvFDkDGTLtdgk..eppiaeaivealaelgl...........a
                      +++++FD DG+L++g+ ++p   e+i+ +l++  ++    +++++++
   K02D10.1a    15    YDTFLFDADGVLWTGDipVPGAIEWINLLLEDPSKkvfvltnnstkT 61

                   pleevekllgrgl.g...erilleggltaell..................
                    +++++k+   g+++ ++ +++  + + a++l+++ ++ +++     +++
   K02D10.1a    62 LEQYMKKIEKLGFgHlgrNNVISPAIVLADYLksnadkfsgeyvyligte 111

                   .....................................ld.evlglial.d
                   + + + +++++ +  ++++++ +++++++  ++ + ++ ++++ + ++ +
   K02D10.1a   112 nlkatlendggvkcfgtgpdsirdhtdgdfihkvdmsIApKAVVCSYDaH 161

                   klypgarealkaLkerGikvailTngdr.naealle..algla.lfdaii
                   + yp +++a ++L++     +++Tn d++++ ++ +  ++g  ++ +a +
   K02D10.1a   162 FSYPKIMKASNYLQDP-SVEYLVTNQDYtFPGPVPGvvIPG-SgATSAAV 209

                   dsddvggvgpivvgKPkpeifllalerlgvkpeevgpevlmvGDginDap
                   ++   +  +p v+gKP++ ++  +l+r+ v+p+++    +m+GD++ +++
   K02D10.1a   210 TAVTGR--DPKVFGKPHKPMADFLLRRAHVDPKRT----VMFGDRLDTDI 253

                   alaaAG<-*
                   ++++A+
   K02D10.1a   254 MFGNAN    259



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