Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K02E10.8
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Query: K02E10.8 CE30157 status:Partially_confirmed TR:Q21139 protein_id:AAC47074.4
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ig Immunoglobulin domain 83.8 1.5e-21 4
dTDP_sugar_isom dTDP-4-dehydrorhamnose 3,5-epimerase 3.7 6 1
UPF0041 Uncharacterised protein family (UPF00 3.6 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ig 1/4 37 106 .. 1 50 [] 24.1 5e-05
ig 2/4 285 338 .. 1 50 [] 15.2 0.015
ig 3/4 371 422 .. 1 50 [] 17.6 0.0032
dTDP_sugar_isom 1/1 442 457 .. 166 181 .] 3.7 6
ig 4/4 455 521 .. 1 50 [] 26.8 9.3e-06
UPF0041 1/1 629 641 .. 38 50 .. 3.6 9.6
Alignments of top-scoring domains:
ig: domain 1 of 4, from 37 to 106: score 24.1, E = 5e-05
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le.................
Ge++ LtC+v + +v+W +++ +l+++++++ +++++ + +
K02E10.8 37 GETAILTCRVE---HQqGpVQWMKDDFgLGtdrdkplpgnkryrmvg 80
...tsslslti.svtpeDsgGtYtCvv<-*
+ ++ ++l+i++vt D+ + C+
K02E10.8 81 saaNGEYNLEIsNVTLFDD-DDFACQI 106
ig: domain 2 of 4, from 285 to 338: score 15.2, E = 0.015
*->GesvtLtCsvsgfgpp.p.vtWlrngk.letsslslti.svtpeDsg
++s+ L C v+ ++++++W++++++l ++ +lt+++++ eD+
K02E10.8 285 NGSALLACNVNAKPLDnVkISWYKGNQkLRETGDTLTFeTLKMEDHN 331
GtYtCvv<-*
+C++
K02E10.8 332 RDIFCEA 338
ig: domain 3 of 4, from 371 to 422: score 17.6, E = 0.0032
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le.tsslslti.svtpeDs
G+ + + C ++p p ++W+r+++++ ++ +lt+++v+
K02E10.8 371 GDNAFFHCATL--ANPaPaIFWTRGDSdEIiGHGENLTLeNVRTWQQ 415
gGtYtCvv<-*
G+Y C++
K02E10.8 416 -GNYNCTA 422
dTDP_sugar_isom: domain 1 of 1, from 442 to 457: score 3.7, E = 6
*->pvLSeKDanaplLaea<-*
p +S KD + +L+ea
K02E10.8 442 PTVSMKDEVSASLDEA 457
ig: domain 4 of 4, from 455 to 521: score 26.8, E = 9.3e-06
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le...............ts
e + C+ s + p++ +v+W+ ngk++ ++++ + ++ +++
K02E10.8 455 DEATEIICEIS-GRPKtNnVRWTVNGKeINfnngritvhqypkpyGK 500
slslti.svtpeDsgGtYtCvv<-*
+ l i+++++eD G+Y C +
K02E10.8 501 ESILKIkDLKEEDF-GVYNCSA 521
UPF0041: domain 1 of 1, from 629 to 641: score 3.6, E = 9.6
*->lKRppekiSgpqn<-*
+K++ ++iS+pqn
K02E10.8 629 MKKNSDYISIPQN 641