Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K02E11.1
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Query: K02E11.1 CE11644 status:Partially_confirmed TR:Q21145 protein_id:CAB01223.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Nucleoside_tran Nucleoside transporter 550.1 1.5e-161 1
COX2_TM Cytochrome C oxidase subunit II, tran 6.2 2.7 1
UPF0060 Uncharacterized BCR, YnfA/UPF0060 fam 5.0 0.38 1
Lipase3_N Lipase 3 N-terminal region 3.7 9.6 1
DUF345 Family of unknown function (DUF345) 3.7 3.1 1
TatD_DNase TatD related DNase 2.8 8.6 1
Guanylin Guanylin precursor 1.6 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TatD_DNase 1/1 286 301 .. 270 285 .] 2.8 8.6
COX2_TM 1/1 431 442 .. 1 12 [. 6.2 2.7
Guanylin 1/1 564 578 .. 1 17 [. 1.6 4.7
Lipase3_N 1/1 571 620 .. 1 63 [. 3.7 9.6
DUF345 1/1 625 641 .. 1 18 [. 3.7 3.1
UPF0060 1/1 752 760 .. 100 109 .] 5.0 0.38
Nucleoside_tran 1/1 505 794 .. 1 346 [] 550.1 1.5e-161
Alignments of top-scoring domains:
TatD_DNase: domain 1 of 1, from 286 to 301: score 2.8, E = 8.6
*->EelaqitteNakrLFs<-*
Ee++ ++ +N++++ +
K02E11.1 286 EEVKHAIKHNFQQVLM 301
COX2_TM: domain 1 of 1, from 431 to 442: score 6.2, E = 2.7
*->matwwglnfQDs<-*
+atw+ nfQ+s
K02E11.1 431 NATWYSSNFQNS 442
Guanylin: domain 1 of 1, from 564 to 578: score 1.6, E = 4.7
*->MnafllsaLcLsavAvv<-*
M a+l+++ Ls vAvv
K02E11.1 564 MRASLFFG--LSSVAVV 578
Lipase3_N: domain 1 of 1, from 571 to 620: score 3.7, E = 9.6
*->lleavvtlalarwaaviStqgKVEKELEEQElevlrksavtsrrcsl
+l++v+++++ + + ++ ++ +k+ ++r++s+
K02E11.1 571 GLSSVAVVVCFILLNFLKRLA-------------FYKKFGILRTSSQ 604
tiseqfefwvqaatas<-*
+++e + +w+ + +a+
K02E11.1 605 SDEEGISSWESVKLAF 620
DUF345: domain 1 of 1, from 625 to 641: score 3.7, E = 3.1
*->MknkNIvKLfFasmfsLF<-*
M+ NI+ LfF+ + +LF
K02E11.1 625 MQFANIFVLFFVTL-ALF 641
UPF0060: domain 1 of 1, from 752 to 760: score 5.0, E = 0.38
*->lVImyApGRg<-*
l++myAp R
K02E11.1 752 LIMMYAP-RS 760
Nucleoside_tran: domain 1 of 1, from 505 to 794: score 550.1, E = 1.5e-161
*->limivviNsmgnAllQnSlfGlAgefPskYtqavliGqnlaGvlvsl
l++ivv+N+ +n+l+QnS+fGlA++fP+kYt+av+iGqn++G++v++
K02E11.1 505 LGTIVVLNA-ANGLFQNSMFGLASPFPFKYTNAVIIGQNFCGTAVTV 550
lmialtkAsnseDPvslsesAllYFitalvvvviCiicylvlkklrFyry
l++ ltkA++++ ++++A+l+F++++v+vv+C+i++++lk+l+Fy++
K02E11.1 551 LSM-LTKAASDD----VQMRASLFFGLSSVAVVVCFILLNFLKRLAFYKK 595
ylqrkdGHiTdlagpseqetkeelisegeedqpesgskvaLhrelsgtfe
+++++ ++++++ee+is++e+ ++++fe
K02E11.1 596 FGILR----------TSSQSDEEGISSWES--------------VKLAFE 621
pnseqlenvflGkvsffviLakfpvlalsvvliftvtlsvFPaptaevvs
++++q++n+f+ +ffv+La+fp+++++v+++++++l++F++p
K02E11.1 622 KSKMQFANIFV---LFFVTLALFPNVCMYVKDAKKGELHSFVVP------ 662
SeaghlsewsekYFmpvlcFLlFNlFDllGrilaavfmwPgqKFdsrwlp
++ YFm+v++FL+FNlF++lG+++a+++++Pg+ +++w++
K02E11.1 663 ---------EK-YFMDVVTFLNFNLFAFLGSLMANWIRFPGP--NTVWIC 700
vlvilRllFiPLFllCnykprDssrGDEalPvfFesdalFiilmalfafs
v+ +R++F+++F+++ny+p+D++r a+Pv+Fes++lF++++++fa++
K02E11.1 701 VA--ARFWFMFYFPAANYHPMDFPR---AYPVLFESTWLFAFNICIFALT 745
nGYLsSLaMmyaPksVdnpheaetAGaltvfFLilGLalGavfSfvira<
+GYLsSL+MmyaP+s+++p+++++AG++++fFLi+G+++G+vfS++ir+
K02E11.1 746 SGYLSSLIMMYAPRSHEDPKIQRMAGMIASFFLIFGIVAGLVFSWQIRL 794
-*
K02E11.1 - -