Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K02E7.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: K02E7.4 CE11628 status:Partially_confirmed TR:O17256 protein_id:AAB71025.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
K_tetra K+ channel tetramerisation domain 64.5 3.9e-17 1
BTB BTB/POZ domain 15.7 0.006 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
K_tetra 1/1 65 118 .. 50 107 .. 64.5 3.9e-17
BTB 1/1 80 125 .. 79 137 .] 15.7 0.006
Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 65 to 118: score 64.5, E = 3.9e-17
*->ddetgEyFFDRsPkhFetILnfYRtGdGkLhrpevcldsfleEleFy
+de+g++F+DRsPkhF++ILn++R+Gd+ + ++++++E++Fy
K02E7.4 65 KDESGCIFIDRSPKHFDIILNYMRDGDVTVT---KNHEEVMAEAKFY 108
gldelaiesCc<-*
l+el + +C+
K02E7.4 109 LLEEL-VKLCK 118
BTB: domain 1 of 1, from 80 to 125: score 15.7, E = 0.006
*->fealLefiYtgelsitqeqksPssckseenveelLelAadklqipsl
f+++L+++ g + + +n ee+++ A +++ ++ l
K02E7.4 80 FDIILNYMRDGDVTV------------TKNHEEVMAEA-KFYLLEEL 113
vdaCeefliknl<-*
v++C l +
K02E7.4 114 VKLCKPVLPSRG 125