Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K02E7.4
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Query:  K02E7.4  CE11628    status:Partially_confirmed TR:O17256 protein_id:AAB71025.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
K_tetra  K+ channel tetramerisation domain               64.5    3.9e-17   1
BTB      BTB/POZ domain                                  15.7      0.006   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
K_tetra    1/1      65   118 ..    50   107 ..    64.5  3.9e-17
BTB        1/1      80   125 ..    79   137 .]    15.7    0.006

Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 65 to 118: score 64.5, E = 3.9e-17
                   *->ddetgEyFFDRsPkhFetILnfYRtGdGkLhrpevcldsfleEleFy
                      +de+g++F+DRsPkhF++ILn++R+Gd+      + ++++++E++Fy
     K02E7.4    65    KDESGCIFIDRSPKHFDIILNYMRDGDVTVT---KNHEEVMAEAKFY 108

                   gldelaiesCc<-*
                    l+el + +C+
     K02E7.4   109 LLEEL-VKLCK    118

BTB: domain 1 of 1, from 80 to 125: score 15.7, E = 0.006
                   *->fealLefiYtgelsitqeqksPssckseenveelLelAadklqipsl
                      f+++L+++  g + +             +n ee+++ A +++ ++ l
     K02E7.4    80    FDIILNYMRDGDVTV------------TKNHEEVMAEA-KFYLLEEL 113

                   vdaCeefliknl<-*
                   v++C   l  +
     K02E7.4   114 VKLCKPVLPSRG    125



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