Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K03A11.1
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Query: K03A11.1 CE06071 status:Partially_confirmed TR:Q27502 protein_id:CAB00865.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 115.3 4.1e-33 4
Clathrin Region in Clathrin and VPS 4.9 5.7 1
AP_endonuc_2 AP endonuclease family 2 4.6 3.2 1
DUF195 Uncharacterized BCR, YigN family, COG132 2.4 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP_endonuc_2 1/1 136 173 .. 1 42 [. 4.6 3.2
DUF195 1/1 280 300 .. 1 21 [. 2.4 9.7
ShTK 1/4 821 829 .. 36 44 .] -0.4 2.4e+02
ShTK 2/4 835 875 .. 1 44 [] 36.6 1.7e-09
Clathrin 1/1 864 883 .. 139 158 .] 4.9 5.7
ShTK 3/4 878 914 .. 1 44 [] 51.9 4.7e-14
ShTK 4/4 931 969 .] 1 43 [. 45.5 3.8e-12
Alignments of top-scoring domains:
AP_endonuc_2: domain 1 of 1, from 136 to 173: score 4.6, E = 3.2
*->igahvslsggeeslenaleraaeiGfdaveiflknpvrlwks<-*
++ v++s + +en +e+ a+ G+da++ ++k++ +++++
K03A11.1 136 VHNGVHISTP---TENLAENNANNGLDAIADLVKPY-QNVQL 173
DUF195: domain 1 of 1, from 280 to 300: score 2.4, E = 9.7
*->skrLesilkpvretLeeflkq<-*
+k L+++l++ + +L e +++
K03A11.1 280 EKELDEMLEIAQKQLAEVKRN 300
ShTK: domain 1 of 4, from 821 to 829: score -0.4, E = 2.4e+02
*->CpkTCGfCs<-*
CpkTCG+C
K03A11.1 821 CPKTCGYCC 829
ShTK: domain 2 of 4, from 835 to 875: score 36.6, E = 1.7e-09
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C ++++p+++Ca+ +s+ +C++p+ ++++++e+Cp CGfC
K03A11.1 835 DCNNSPFPRINCAMVTSR--MCKDPQ-WREVLTEDCPNVCGFCL 875
Clathrin: domain 1 of 1, from 864 to 883: score 4.9, E = 5.7
*->pelwaevlkacldkkrflla<-*
+e+ + v+++cl++ +f+ a
K03A11.1 864 TEDCPNVCGFCLEGGCFDKA 883
ShTK: domain 3 of 4, from 878 to 914: score 51.9, E = 4.7e-14
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+ D+a+dC + s+ C n + +qdf+ke+C+kTCGfC
K03A11.1 878 GCF---DKAVDCTTDISI---CMNVG-MQDFVKEYCRKTCGFCR 914
ShTK: domain 4 of 4, from 931 to 969: score 45.5, E = 3.8e-12
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfC<-*
+Cv D++++Ca+w +G+ C++p+Y ++ + +nC+ TCG+C
K03A11.1 931 NCV---DYNTNCASWSFRGY-CTSPFYSYETRFANCAATCGLC 969