Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K03H1.4
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Query: K03H1.4 CE00475 Transthyretin-like family status:Partially_confirmed SW:P34500 protein_id:CAA82657.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF290 Transthyretin-like family 233.4 3.2e-66 1
UL79 UL79 family 1.9 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UL79 1/1 29 41 .. 1 13 [. 1.9 10
DUF290 1/1 23 148 .] 1 129 [] 233.4 3.2e-66
Alignments of top-scoring domains:
UL79: domain 1 of 1, from 29 to 41: score 1.9, E = 10
*->mlGrYvregkpmS<-*
+ Gr+v+egkp+S
K03H1.4 29 IKGRLVCEGKPAS 41
DUF290: domain 1 of 1, from 23 to 148: score 233.4, E = 3.2e-66
*->rdQsvaVkGrLiCggkPaanvkVkLydkdtGpel.giidpDdLLdet
r+Qs+a+kGrL C gkPa++vkVkL++ d+ ++ +g++d Dd+++++
K03H1.4 23 RTQSAAIKGRLVCEGKPASGVKVKLMESDN-SFGpGFLDSDDKMASG 68
kTdenGeFqLsGsttEittINPDPkLnIyHdCndggkepCqRklkitIPk
k+d+ GeF+LsGst+Eit+I +P+L ++HdC+dg++ pCqR++++++Pk
K03H1.4 69 KADSHGEFNLSGSTKEITGI--EPYLVVFHDCKDGIT-PCQRVFRVNVPK 115
eyitsGktpkktFDIGtlnLankfpgEtrdckn<-*
+y++sG+ +kkt+D+G+++La+k+pgEtr+c+n
K03H1.4 116 SYTNSGSSAKKTYDAGVIELAGKYPGETRSCLN 148