hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K03H1.1
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Query:  K03H1.1  CE00507  locus:qrs-2 Glutamine synthetase status:Partially_confirmed SW:P34497 protein_id:CAA82655.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
gln-synt   Glutamine synthetase, catalytic domain       339.3    4.2e-98   1
gln-synt_N Glutamine synthetase, beta-Grasp domain      123.5    5.4e-36   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
gln-synt_N   1/1      28   109 ..     1    94 []   123.5  5.4e-36
gln-synt     1/1     114   366 ..     1   301 [.   339.3  4.2e-98

Alignments of top-scoring domains:
gln-synt_N: domain 1 of 1, from 28 to 109: score 123.5, E = 5.4e-36
                   *->nvkfvdlrFtDitGklqhvripartldegpepledafepgwnFDGSS
                       +++++++++D+tG+  ++r+++rt+d+   p+++++ p+wn+DGSS
     K03H1.1    28    TKIQATYVWIDGTGE--NLRSKTRTFDKL--PKRIEDYPIWNYDGSS 70

                   igGfapIeeSDMvLkPDpstafvDPFraedreggktllviCdvydpd<-*
                   +g +a + +SD +L+P  ++a++DPF       g ++lv+Cd++d+
     K03H1.1    71 TG-QAKGRDSDRYLRP--VAAYPDPFLG-----GGNKLVMCDTLDHQ    109

gln-synt: domain 1 of 1, from 114 to 366: score 339.3, E = 4.2e-98
                   *->erdPRsilkralarlaelGytDtpyfGpEqEFfLfdrnidvrpggwp
                      ++++R+++++++ + +  + +  p+fG+EqE+ ++dr  d++p+gwp
     K03H1.1   114    ATSHRQACAEIMHEIR--DTR--PWFGMEQEYLIVDR--DEHPLGWP 154

                   lqpkggypdpqeEaaWngkeyeGNgGhrgpykggyfdvapplDeardirr
                      k g+pdpq                 g y++++++ ++   ++r++++
     K03H1.1   155 ---KHGFPDPQ-----------------GKYYCSVGADRA---FGREVVE 181

                   eivkaleaaGipvegihhEVApGGQhEidfrpfadalkaADnlqlfKyvv
                    +++a+++aG+++ g+++EV pG Q+E++++ + ++++++D+l++++y++
     K03H1.1   182 THYRACLHAGLNIFGTNAEVTPG-QWEFQIGTC-EGIDMGDQLWMSRYIL 229

                   krvAekhGltATFMPKP.ifgdnWNGSGMHtHqSlwdmrekdGkrNlFad
                   +rvAe++G+ ++++PKP++  ++WNG+G+Ht++S+ +mr+         +
     K03H1.1   230 HRVAEQFGVCVSLDPKPkVTMGDWNGAGCHTNFSTAEMRA---------P 270

                   gdgeyaglSetalhfigGiLkHapaitAftnP.tvNSYkRLvpgrhgteA
                   g g+    +e a+  +     H++a+ ++++++++++ +RL++ rh+t++
     K03H1.1   271 G-GI--AAIEAAMTGLK--RTHLEAMKVYDPHgGEDNLRRLTG-RHETSS 314

                   PvyiaWGvrNRsAsiRIPagkgsvgrgpkagRvEdRlPDpsaNPYLafAA
                    ++++WGv+NR++siRIP+   +v+++ k g++EdR+P+++++PY ++A
     K03H1.1   315 ADKFSWGVANRGCSIRIPR---QVAAERK-GYLEDRRPSSNCDPYQVTAM 360

                   llaAGL<-*
                   + +++L
     K03H1.1   361 IAQSIL    366

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