Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K03H1.1
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Query: K03H1.1 CE00507 locus:qrs-2 Glutamine synthetase status:Partially_confirmed SW:P34497 protein_id:CAA82655.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
gln-synt Glutamine synthetase, catalytic domain 339.3 4.2e-98 1
gln-synt_N Glutamine synthetase, beta-Grasp domain 123.5 5.4e-36 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
gln-synt_N 1/1 28 109 .. 1 94 [] 123.5 5.4e-36
gln-synt 1/1 114 366 .. 1 301 [. 339.3 4.2e-98
Alignments of top-scoring domains:
gln-synt_N: domain 1 of 1, from 28 to 109: score 123.5, E = 5.4e-36
*->nvkfvdlrFtDitGklqhvripartldegpepledafepgwnFDGSS
+++++++++D+tG+ ++r+++rt+d+ p+++++ p+wn+DGSS
K03H1.1 28 TKIQATYVWIDGTGE--NLRSKTRTFDKL--PKRIEDYPIWNYDGSS 70
igGfapIeeSDMvLkPDpstafvDPFraedreggktllviCdvydpd<-*
+g +a + +SD +L+P ++a++DPF g ++lv+Cd++d+
K03H1.1 71 TG-QAKGRDSDRYLRP--VAAYPDPFLG-----GGNKLVMCDTLDHQ 109
gln-synt: domain 1 of 1, from 114 to 366: score 339.3, E = 4.2e-98
*->erdPRsilkralarlaelGytDtpyfGpEqEFfLfdrnidvrpggwp
++++R+++++++ + + + + p+fG+EqE+ ++dr d++p+gwp
K03H1.1 114 ATSHRQACAEIMHEIR--DTR--PWFGMEQEYLIVDR--DEHPLGWP 154
lqpkggypdpqeEaaWngkeyeGNgGhrgpykggyfdvapplDeardirr
k g+pdpq g y++++++ ++ ++r++++
K03H1.1 155 ---KHGFPDPQ-----------------GKYYCSVGADRA---FGREVVE 181
eivkaleaaGipvegihhEVApGGQhEidfrpfadalkaADnlqlfKyvv
+++a+++aG+++ g+++EV pG Q+E++++ + ++++++D+l++++y++
K03H1.1 182 THYRACLHAGLNIFGTNAEVTPG-QWEFQIGTC-EGIDMGDQLWMSRYIL 229
krvAekhGltATFMPKP.ifgdnWNGSGMHtHqSlwdmrekdGkrNlFad
+rvAe++G+ ++++PKP++ ++WNG+G+Ht++S+ +mr+ +
K03H1.1 230 HRVAEQFGVCVSLDPKPkVTMGDWNGAGCHTNFSTAEMRA---------P 270
gdgeyaglSetalhfigGiLkHapaitAftnP.tvNSYkRLvpgrhgteA
g g+ +e a+ + H++a+ ++++++++++ +RL++ rh+t++
K03H1.1 271 G-GI--AAIEAAMTGLK--RTHLEAMKVYDPHgGEDNLRRLTG-RHETSS 314
PvyiaWGvrNRsAsiRIPagkgsvgrgpkagRvEdRlPDpsaNPYLafAA
++++WGv+NR++siRIP+ +v+++ k g++EdR+P+++++PY ++A
K03H1.1 315 ADKFSWGVANRGCSIRIPR---QVAAERK-GYLEDRRPSSNCDPYQVTAM 360
llaAGL<-*
+ +++L
K03H1.1 361 IAQSIL 366