Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K03H6.2
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Query: K03H6.2 CE18012 status:Partially_confirmed TR:O61218 protein_id:AAC04418.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Lipase_3 Lipase (class 3) 181.9 1.1e-53 1
Peptidase_U34 Peptidase family U34 1.0 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Lipase_3 1/1 45 187 .. 1 175 [] 181.9 1.1e-53
Peptidase_U34 1/1 230 264 .. 286 320 .. 1.0 9.1
Alignments of top-scoring domains:
Lipase_3: domain 1 of 1, from 45 to 187: score 181.9, E = 1.1e-53
*->rrdIvvafRGTltllellddlliflttdvtpfefdgninveddqddp
+++v++fR T+t ++l++++l + +v ++ f
K03H6.2 45 QKVLVMSFRATNTGTQLEEEFLNY---FVAKKAF------------- 75
vvkvhggfvdlyfhrgflslrdqvleevlrllekykkedypdykivvTGH
+ ++g ++ f++++l l+ +le+ r+ +ky+ ypdy+++vTGH
K03H6.2 76 --F-DSGYIFEFFYDAYLALWKGGLEAEMRN-LKYR---YPDYEVWVTGH 118
SLGGAlAsLaAadlvanglnngplqrdssrvtvvtfGsPRvGnkkgeFak
SLG+AlAs+ A+++v++gl +++ + ++ t G+PR+G++ ++ +
K03H6.2 119 SLGAALASVGASWVVKTGL------FKPEQMKLLTAGQPRTGDY--AYSN 160
avdelvpvksyRvvnrrDiVPrlPpalf<-*
+++++++ +s+R+v+++D+VP+lP++++
K03H6.2 161 WHQNTFA-YSFRIVHAHDMVPHLPFQYE 187
Peptidase_U34: domain 1 of 1, from 230 to 264: score 1.0, E = 9.1
*->DvkyvlkSHYndTeYDalGdqGTeEQKkTyRaIsl<-*
D + HY +T+ D +Gd+G + + I +
K03H6.2 230 DLSWNDHTHYYNTDLDGYGDKGCPKRTEQFQVITI 264