Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K03H6.2
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Query:  K03H6.2  CE18012    status:Partially_confirmed TR:O61218 protein_id:AAC04418.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Lipase_3      Lipase (class 3)                          181.9    1.1e-53   1
Peptidase_U34 Peptidase family U34                        1.0        9.1   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Lipase_3        1/1      45   187 ..     1   175 []   181.9  1.1e-53
Peptidase_U34   1/1     230   264 ..   286   320 ..     1.0      9.1

Alignments of top-scoring domains:
Lipase_3: domain 1 of 1, from 45 to 187: score 181.9, E = 1.1e-53
                   *->rrdIvvafRGTltllellddlliflttdvtpfefdgninveddqddp
                       +++v++fR T+t ++l++++l +   +v ++ f
     K03H6.2    45    QKVLVMSFRATNTGTQLEEEFLNY---FVAKKAF------------- 75

                   vvkvhggfvdlyfhrgflslrdqvleevlrllekykkedypdykivvTGH
                     + ++g ++  f++++l l+  +le+  r+ +ky+   ypdy+++vTGH
     K03H6.2    76 --F-DSGYIFEFFYDAYLALWKGGLEAEMRN-LKYR---YPDYEVWVTGH 118

                   SLGGAlAsLaAadlvanglnngplqrdssrvtvvtfGsPRvGnkkgeFak
                   SLG+AlAs+ A+++v++gl      +++ + ++ t G+PR+G++  ++ +
     K03H6.2   119 SLGAALASVGASWVVKTGL------FKPEQMKLLTAGQPRTGDY--AYSN 160

                   avdelvpvksyRvvnrrDiVPrlPpalf<-*
                   +++++++ +s+R+v+++D+VP+lP++++
     K03H6.2   161 WHQNTFA-YSFRIVHAHDMVPHLPFQYE    187

Peptidase_U34: domain 1 of 1, from 230 to 264: score 1.0, E = 9.1
                   *->DvkyvlkSHYndTeYDalGdqGTeEQKkTyRaIsl<-*
                      D  +    HY +T+ D +Gd+G +     +  I +
     K03H6.2   230    DLSWNDHTHYYNTDLDGYGDKGCPKRTEQFQVITI    264



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