Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K04A8.5
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Query: K04A8.5 CE11708 lipase status:Partially_confirmed TR:Q94252 protein_id:AAC48051.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
abhydro_lipase ab-hydrolase associated lipase region 107.9 2e-29 1
abhydrolase alpha/beta hydrolase fold 34.7 1.1e-09 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
abhydro_lipase 1/1 28 101 .. 1 71 [] 107.9 2e-29
abhydrolase 1/1 115 402 .. 1 232 [] 34.7 1.1e-09
Alignments of top-scoring domains:
abhydro_lipase: domain 1 of 1, from 28 to 101: score 107.9, E = 2e-29
*->idpeanmnvsqlIkkwGYpsEeHtVtTeDGYILtLhRIprgk..knk
+d e ++++++lIk wGY+ E++ tT+DG IL+LhRIp+g++ + +
K04A8.5 28 VDLEFYLDTPELIKSWGYSVEIYNTTTKDGFILELHRIPYGRevPTS 74
td.lgkrPvVlLQHGLlasSsnWVvNl<-*
+d +++rPv++LQHG l+sS++WV N+
K04A8.5 75 SDvNNSRPVIFLQHGFLCSSFDWVANS 101
abhydrolase: domain 1 of 1, from 115 to 402: score 34.7, E = 1.1e-09
*->frvillDlrGfGeSsp..............sdlaeyrfddlaedlea
f+v+l++ rG +S+++ + +++++++ + ++ ++ dl +++ +
K04A8.5 115 FDVWLGNFRGNTYSRKhvslnpdkdpkfwdWSWDQISEYDLPAMIGK 161
lldalglekpvilvGhSmGGaialayaakyPel..rvkalvlvspp....
l+ g+e +++ G+S+G+++++a +++ P+ ++++k+ +++p ++ +
K04A8.5 162 ALEISGQES-LYYTGFSLGTLTMFAKLSTDPKFsrKIKKYFALAPIgsik 210
....lpaglssdlfprq.gnleglllanfrnrlsrsveallgralkqffl
+ ++++ +l++ + ++++++ +++ ++ ++ +s +++ +++++ f +
K04A8.5 211 hahgVFLFLGRHFGKDYeEYVKKHGSDELFG-SSLLFKKIVKYTCGLFDT 259
lgrplvsdflkqaedwlsslirqgeddggdgllga...............
l++ +sd+ + ++++ ++q + ++++ a+++++ + ++ +
K04A8.5 260 LEEF-CSDITLLFIGTANENWNQTRIPVYLAHTPAgsssnvmahldqmfs 308
.........avalgkllqwdls.alkd....ikvPtlviwgtdDplvpld
++ ++ + + +++++ +++++ ++ +vP++++w +dD+l + +
K04A8.5 309 yggvptfdmGEEKNLKAYGQKLpPQYNftgiADVPIYLFWSDDDWLSTKQ 358
asek.lsalipn...aevvviddagHlallekpeevaeli.kfl<-*
+ e +l a ++++ + + i+++ Hl ++++ ++ ++++
K04A8.5 359 DLEEtLFAQLNSqvvQGSFRIENYNHLHFIWGTNAASQVYnVIT 402