hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K04C2.2
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Query:  K04C2.2  CE00722    status:Partially_confirmed TR:Q21210 protein_id:AAA50675.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
DNA_pol_V     DNA polymerase V                          991.3   2.3e-294   1
MSF1          MSF1-like conserved region                  5.6        1.8   1
RseA_N        Anti sigma-E protein RseA, N-terminal d     5.3          3   1
Adenyl_transf Streptomycin adenylyltransferase            3.2        3.1   1
DUF453        Protein of unknown function (DUF453)        1.5        5.9   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Adenyl_transf   1/1       1    22 [.     1    22 [.     3.2      3.1
RseA_N          1/1     626   649 ..    12    35 ..     5.3        3
DNA_pol_V       1/1       1   707 [.    72   820 .]   991.3 2.3e-294
MSF1            1/1     941   955 ..   150   164 .]     5.6      1.8
DUF453          1/1     950   959 ..   381   390 .]     1.5      5.9

Alignments of top-scoring domains:
Adenyl_transf: domain 1 of 1, from 1 to 22: score 3.2, E = 3.1
                   *->MRtEkEmLDvvLefAekdervR<-*
                      MR   E LD+++++Ae d  vR
     K04C2.2     1    MRPPSELLDIISKLAELDPLVR    22

RseA_N: domain 1 of 1, from 626 to 649: score 5.3, E = 3
                   *->GEqvdlELinaLaALaqDaElqqt<-*
                      +E+vd+EL+++L+A + Da  +++
     K04C2.2   626    NEAVDQELLDKLNAALGDAAPRDS    649

DNA_pol_V: domain 1 of 1, from 1 to 707: score 991.3, E = 2.3e-294
                   *->mllfaelalllskllelkpsvleplfrlLsallqekskleflprvil
                      m++++el++++skl+el+p+v+++++r+Ls++++e+s++e++++vi+
     K04C2.2     1    MRPPSELLDIISKLAELDPLVRKGAVRQLSSKQEELSDNELNTYVIE 47

                   vvIlkclkaatfqeplvttLlptinklLsspavselekllavalkyklvl
                   ++I++c++a++++++++tt+l+ti +++++++++el+k+lava+k+++++
     K04C2.2    48 RLISGCASARAAVRLGYTTALGTI-LMTKAGESWELDKILAVADKKMDLA 96

                   eneksnlvaeenyevlvnlckvalsgekkasklvdaslaglllalskdkl
                   e+++++++a+++y++lv++c++++++e++a+k+v++s++++++a+s++++
     K04C2.2    97 EKTVGTGHAIGHYLILVTYCQTRKLKEAEATKIVEHSKKIRDFAPSLAFS 146

                   paswkyileegllktksqkassikfrllvvllvllseeqlvlvkftdtir
                   +++++++l+++++++++qk++s+++++++++l++++++++v+++++++++
     K04C2.2   147 QINLLCSLATKTKESVFQKSVSPAIEMNLEGLSSQFTPENVYLALRLRNS 196

                   hflehacvsksqkkdefikfskdavkeilekekrdperqylvflsllavt
                   h++++a+++k++kkd++i+fs+d++++il+++kr+++++++vfl+ll+++
     K04C2.2   197 HSTVVAKYAKFVKKDGSIQFSDDQYPKILAALKRCDFATVQVFLPLLIKA 246

                   eqqlpeldtflrvvlellelasqnydvvdrlkfiqkllddlsvgstknlk
                   +++++++d+++++vle+++l+s++++v+dr+++i+++++d ++g++k+++
     K04C2.2   247 SVESSGFDKMYLKVLEPWALSSNETKVFDRILTIVTQFFD-FGGDVKSIV 295

                   vlqlssvlsleetvkrgrksfearlksitdslkliqkeklslkqarllll
                   v+++++vl+++et++rg+++f++++k+++d++++iq+++++l++++++++
     K04C2.2   296 VVFTKEVLNRMETATRGKGQFRLMSKKVDDFAAFIQSKLSELRDEEAYTA 345

                   lfeletkkktskipetaalfsllseqgarkvevsamesLlqtlsvafeqs
                   l+ele++++++k+++t+++++lls++g+++++v+++e+L+++++v++++s
     K04C2.2   346 LKELEKCGNVDKACGTGLTTALLSNLGKKQISVWIKENLSNQDEVRKIVS 395

                   afkhqsgkkkleqLvqlaslkLnkslneadvtsfdrsvrekqqqqawdql
                   af+++++k+++++L++l+s+k+++++++++++++d+++++k+++++++++
     K04C2.2   396 AFSNWDEKSRITVLSALLSQKATETSQSVVTSIIDSLFYVKTRAGEFASI 445

                   kktlkeeeshssdvvaqafehLvllvllailkspaeskSlqilsyidvLe
                   ++++k+ee+++++vva+++e++v++++++i+ks++++kSlqil+y+++L+
     K04C2.2   446 QISEKNEEVLRQLVVAVQGEEEVKKAEKSIGKSKLRKKSLQILWYVTRLW 495

                   diitCiskafasldsdssrsrakekdeeEpnwmeVLveiLLSLLaqpsal
                   ++i+++s+++a++dsdss+++a++k+e+++n+++V+v++LLS+L++++++
     K04C2.2   496 SRIAASSVDSAAYDSDSSEILAIAKNEADGNNSLVFVDLLLSILSREQKF 545

                   lRklvrlvFthfiehltsegLqliLdVLkaeenedesdklfegEdedeed
                   +R++++++F+h+i++l+s++L++i+++++++e+e     l++++ded+ed
     K04C2.2   546 HRTPTAFAFVHAIPTLESKDLCHIVETAMMSEAE-----LAGNDDEDMED 590

                   leesdddedesesikdsEsesesedEseesDEeedDdEanegvvqidkev
                   +e++++de+e++s+++++++s+    s+++DEeedDdE+ne+v+q
     K04C2.2   591 EEGMPFDESEIPSGNGDDEASD----SDDDDEEEDDDEGNEAVDQ----- 631

                   rraLmevLqagdAlvnD.geaDlDqLEGLsldgedSedeedlDDEaMmaL
                        e+L++++A+++D +++D          ++++++++dlDDEaM+++
     K04C2.2   632 -----ELLDKLNAALGDaAPRD----------SSSDVEMDDLDDEAMQKM 666

                   DekLARsFeiFkekKkALsriQagkeeKkkaqsekqlvvdFKiRVlDLLe
                   De+LA   ++Fk++        a+k++K+k++s+k++++ +K++++DLL+
     K04C2.2   667 DERLA---AAFKAI--------APKAGKDKKRSAKSVEA-LKMKIADLLL 704

                   vyv<-*
                   +++
     K04C2.2   705 IAI    707

MSF1: domain 1 of 1, from 941 to 955: score 5.6, E = 1.8
                   *->regmEyvleefleee<-*
                      re +Eyv+++++e+e
     K04C2.2   941    RESLEYVIQKMFEGE    955

DUF453: domain 1 of 1, from 950 to 959: score 1.5, E = 5.9
                   *->kLMeGwVrvp<-*
                      k++eG+V++
     K04C2.2   950    KMFEGEVFIQ    959

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