hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K04G7.10
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  K04G7.10  CE30443   SN-RNP U1 status:Confirmed TR:Q09584 protein_id:AAA62536.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
rrm      RNA recognition motif. (a.k.a. RRM, RBD, or     80.5    3.1e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
rrm        1/1     106   176 ..     1    77 []    80.5  3.1e-22

Alignments of top-scoring domains:
rrm: domain 1 of 1, from 106 to 176: score 80.5, E = 3.1e-22
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      lfVg ++++++e++L++ F+ +G+i+ +++v+D      e gk++G+
    K04G7.10   106    LFVGRINYETSESKLRREFEAYGKIKKLTMVHD------EAGKPRGY 146

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   aF+e+ ++ ++  A ++ +G++++g++l v
    K04G7.10   147 AFIEYSDKAEMHTAYKKADGIKVDGKRLVV    176

[DB home][top]