hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K05F6.7
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Query:  K05F6.7  CE28588    status:Partially_confirmed TR:O44865 protein_id:AAB95027.2

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
F-box     F-box domain                                   29.8    3.4e-06   1
lipocalin Lipocalin / cytosolic fatty-acid binding pr     4.2          5   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
F-box       1/1       7    54 ..     1    46 []    29.8  3.4e-06
lipocalin   1/1     127   163 ..   122   157 .]     4.2        5

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 7 to 54: score 29.8, E = 3.4e-06
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
                      f+ll+LPd+ l+ +l+++ +++l+ +s VS++++++ + l +  ++
     K05F6.7     7    FPLLRLPDKNLKDVLRNMRTIELVCFSMVSQKTKDFTRELcIAGsSQ 53

                   l<-*
                   l
     K05F6.7    54 L    54

lipocalin: domain 1 of 1, from 127 to 163: score 4.2, E = 5
                   *->Rtpelspealekfetltkelgipe.envvclrqterC<-*
                      R++e++  ++++ ++++k+l+i+  + ++++ +++++
     K05F6.7   127    RNMEVDASQVQIIKECLKGLNISQlDIYFTTEIKNAV    163

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