Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K06A5.6
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Query: K06A5.6 CE11776 acyl-coA dehydgrogenase status:Confirmed TR:O44549 protein_id:AAK21433.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Acyl-CoA_dh Acyl-CoA dehydrogenase, C-terminal doma 257.8 1.5e-73 1
Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain 187.7 1.9e-52 1
Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal doma 129.3 6.9e-35 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Acyl-CoA_dh_N 1/1 40 156 .. 1 132 [] 129.3 6.9e-35
Acyl-CoA_dh_M 1/1 158 259 .. 1 106 [] 187.7 1.9e-52
Acyl-CoA_dh 1/1 263 412 .. 1 162 [] 257.8 1.5e-73
Alignments of top-scoring domains:
Acyl-CoA_dh_N: domain 1 of 1, from 40 to 156: score 129.3, E = 6.9e-35
*->LseEqemlratvREkFaqeeiaPyaAeGRRvDksgefPalrelikaL
LseE++ +++tvR Fa i P++ e +D+ + + ++i +
K06A5.6 40 LSEEESSIVGTVR-RFAVNVIKPLVRE---MDDKSQMH--QSVITGT 80
gqlGllginvPEeyGGaGadylaRFmLHAQVaalviEElarvcAstgvil
+++Gl+gi++PE yGG G+++++ a+lviEEla+v+ s++v+
K06A5.6 81 FENGLMGIEIPEKYGGPGSSFFD--------AVLVIEELAKVDPSVSVFV 122
svhssLgqnpilkfGseEQKkkyLpqltsGdliga<-*
v+++L+ i+ +G+eEQK+kyLp+ + ++ig+
K06A5.6 123 DVQNTLVAPLIIQLGTEEQKQKYLPKIVT-EAIGS 156
Acyl-CoA_dh_M: domain 1 of 1, from 158 to 259: score 187.7, E = 1.9e-52
*->AlTEPgAGSDvgSlkTtAekkEGddyiLNGsKmWITNGgqAdwyiVl
Al+E g+GSD+++lkTtA+k+ Gdd ++ GsKmWITN+g+A ++V+
K06A5.6 158 ALSETGSGSDAFALKTTAKKD-GDDFVISGSKMWITNAGHAQFFLVF 203
AvTDpakkvpgkkgitaFlVekdtpGfsiGkKedKLGlRgSdTcELiFED
A+ D a +g+kgit FlV+++ +G+s+GkKedKLG+R+S+Tc + F++
K06A5.6 204 ANADSA---KGYKGITCFLVDRNQEGVSVGKKEDKLGIRASSTCSVHFDN 250
vrvPesniL<-*
vrv +s+iL
K06A5.6 251 VRVHKSSIL 259
Acyl-CoA_dh: domain 1 of 1, from 263 to 412: score 257.8, E = 1.5e-73
*->GkGfkiametLnlagRlgiAaqalGiArrAleeAveYAkeRkqFGak
GkG+k+a e+Ln agR+gi+aq+lG+A++++++++ Y ++R+qFG +
K06A5.6 263 GKGYKYAIECLN-AGRIGIGAQMLGLAQGCFDQTIPYLQQREQFG-Q 307
pIadfQlvqfkLAdmateleaaRllvyrAAwl.DqGkdarleaamAKlfa
+++dfQ++q+++ + ++e+eaaRllvy AA+++++G ++ +eaamAKlfa
K06A5.6 308 RLIDFQGMQHQIGQTRMEIEAARLLVYNAARMkQNGLPFVREAAMAKLFA 357
teaAvevadeAvQihGGyGytkegpnarerdavSypveRlyRDarilrIy
+ +A+ +++++v+++GG G+tke +pve++yRD++i++Iy
K06A5.6 358 SQVATTATSKCVEWLGGVGFTKE-----------FPVEKFYRDSKIGTIY 396
EGTsEIqrliIaRall<-*
EGTs+Iq+++Ia+ +
K06A5.6 397 EGTSNIQLNTIAKLVD 412