hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K06A5.3
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Query:  K06A5.3  CE11772    status:Partially_confirmed TR:O44550 protein_id:AAK21432.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
MSP_domain MSP (Major sperm protein) domain              94.0    2.7e-26   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
MSP_domain   1/1       6   124 ..     1   138 []    94.0  2.7e-26

Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 6 to 124: score 94.0, E = 2.7e-26
                   *->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
                      e + +P++ + +  +++pfd++  ++ l+l+N+s + i FKvK+Tnn
     K06A5.3     6    EFPGFPNDFHAFEVSPIPFDIN--SKELSLKNHSNRAILFKVKCTNN 50

                   klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
                   k+ r+  +++il+Pg+  + ++          + +  +      d + v+
     K06A5.3    51 KRIRIEECSDILKPGNETTATIK--------KLVDTVD-----GDSLYVI 87

                   yleapsedadrqqkraareafkaaaaag.vlvgerkipvvfe<-*
                   y+++++e+++      +++a++++++a +++v +++i v ++
     K06A5.3    88 YTLVGKEWHNE-----RMSAWRCWERAKkQAVPTQCISVPIK    124

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