hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K06B4.1
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Query:  K06B4.1  CE25930  locus:nhr-51 Zinc finger, C4 type (two domains) status:Partially_confirmed TR:O17927 protein_id:CAB05760.2

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
hormone_rec Ligand-binding domain of nuclear hormone    166.3    2.2e-50   1
zf-C4       Zinc finger, C4 type (two domains)           37.7    5.4e-10   2

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
zf-C4         1/2       3    21 ..     1    19 [.    16.0   0.0017
zf-C4         2/2      35    86 ..    17    69 ..    25.6  2.3e-06
hormone_rec   1/1     161   347 ..     1   203 []   166.3  2.2e-50

Alignments of top-scoring domains:
zf-C4: domain 1 of 2, from 3 to 21: score 16.0, E = 0.0017
                   *->elCkVCGDkASGyHYGvlT<-*
                      + C++C  kA+G HYGv++
     K06B4.1     3    KNCLICHRKAAGQHYGVSS    21

zf-C4: domain 2 of 2, from 35 to 86: score 25.6, E = 2.3e-06
                   *->vlTCEGCKGFFrRsiqknlviYsCkrnkdCvIdKrnRnrCQyCRLkK
                      vl+C  CK FF R +  nl+ Y+C++ ++C    +   +C++CR++K
     K06B4.1    35    VLSCFACKMFFHRMVVENLH-YCCQKFNKCYEKFIILPKCKACRYQK 80

                   CLeVGM<-*
                   CLe+GM
     K06B4.1    81 CLEMGM    86

hormone_rec: domain 1 of 1, from 161 to 347: score 166.3, E = 2.2e-50
                   *->frqlllivewaKslPfFkeLsleDQiiLLkhswlelllLrlayrsyk
                      f+++++ ++ + +++f++++s +D+++++  ++l+ ++++ ++r+ +
     K06B4.1   161    FLDVYSRISHFSNFEFMNNISFADRKLIFSFNCLRTGVFHGSMRTLR 207

                   ekkataDgsdtllfpdGtdidrdsl.....gsselirrifelliklrvnv
                   e        d+ll+p+G d+++d+ ++  + s+ l++r ++ll+
     K06B4.1   208 EQR------DCLLTPSGEDVYPDAVhnlfkDSPGLLNRTCCLLV------ 245

                   laplieLkldeeEyalLkAIvLfnPsdvpgLsesarelveklqekylsaL
                    ++lieLk+++eEy lL+ I+++nP+  ++Ls+ ar++++++q ky+saL
     K06B4.1   246 -SKLIELKVTNEEYQLLSLIFFCNPTISHNLSDFARNTLASHQIKYSSAL 294

                   lqycllnypdslssdgpsRFakLLlllpvlrslssdlkehlfflkrlfnl
                   +++++ ++p+    ++p RF++L++l +v++++ +d+++ + ++++   +
     K06B4.1   295 FRHLQITNPG----TAPVRFQELISLVHVINRVTNDMQH-VSMMFQCM-I 338

                   pkvppLlkell<-*
                   p+++  +k+l
     K06B4.1   339 PSFK--FKQLV    347

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