Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K07A3.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: K07A3.1 CE21023 locus:fbp-1 fructose-bisphosphatase status:Confirmed TR:Q9N2M2 protein_id:AAF39910.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FBPase Fructose-1-6-bisphosphatase 618.1 4.9e-182 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FBPase 1/1 15 339 .. 1 342 [] 618.1 4.9e-182
Alignments of top-scoring domains:
FBPase: domain 1 of 1, from 15 to 339: score 618.1, E = 4.9e-182
*->iTLtrfileeqgedalaKNEatgeltdlLssLalaakeiartIarag
iTL+r +l+eq++ a a+gelt lL + a k+ia+++++ag
K07A3.1 15 ITLQRYVLQEQRKHAD----ASGELTALLTNMLVAIKAIASATQKAG 57
LanllGlagatNsqGDeQKkLDViaddifinALkasgvvavlaSEEedel
La+l+G+agatN+qG+e+KkLDV++++++in+Lk+s +++l+SEE+del
K07A3.1 58 LAKLYGIAGATNVQGEEVKKLDVLSNELMINMLKSSYTTCLLVSEENDEL 107
vvleesgrkeGkyaVafDPLDGSSNIDtnVSVGTIFgIypraspggdast
+ +ee +Gky+V+fDPLDGSSNID+ VS+GTIFgIy+++ + ++t
K07A3.1 108 IEVEEQ--RRGKYIVTFDPLDGSSNIDCLVSIGTIFGIYKKRG--DGPAT 153
ikdflqpGreqVAAGYviYGpsTmLVLTlGdakGVhgFtLDpslGeFiLt
d+l+pG+e+VAAGY++YG++Tm VL++G +GV+gFtLDps+GeFiLt
K07A3.1 154 VDDVLKPGKEMVAAGYALYGSATMVVLSTG--DGVNGFTLDPSIGEFILT 201
henvkiPekgkiysINeGNyahWDnpvrkYIddckagkkgprgkpysaRY
h+n+k +ekg+iys+NeG++++W ++ ++YI k+++ g+ k+ + RY
K07A3.1 202 HPNMKCKEKGSIYSLNEGYAQTWSKGFAEYIRTRKYPEAGK--KAMGQRY 249
iGSlVADvHRiLlyEGGIFlYPgdaRkgypnGKLRlLYEcaPmAFLvEQA
+GS+VADvHR++l GGIFlYP + + pnGKLRlLYEc+PmA+++EQA
K07A3.1 250 VGSMVADVHRTILN-GGIFLYPPT--VSAPNGKLRLLYECNPMAYIIEQA 296
GGkAscDGkgeriLDivPtrLHqRvPiilGSkdeVerfeeyheep<-*
GG A+ +Gk eriLDi+Pt +HqR+PiilGSk +Ve+ +ey+++
K07A3.1 297 GGLAT-TGK-ERILDIQPTQIHQRAPIILGSKLDVEEALEYLAKY 339