Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K07B1.7a
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Query: K07B1.7a CE11888 status:Partially_confirmed TR:O01886 protein_id:AAB54241.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
G-patch G-patch domain 61.2 2.6e-16 1
rrm RNA recognition motif. (a.k.a. RRM, RBD, or 5.7 3.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
rrm 1/1 37 58 .. 1 22 [. 5.7 3.3
G-patch 1/1 396 446 .. 1 45 [] 61.2 2.6e-16
Alignments of top-scoring domains:
rrm: domain 1 of 1, from 37 to 58: score 5.7, E = 3.3
*->lfVgNLppdvteedLkdlFskf<-*
V+N+p++ +dL+++Fs f
K07B1.7a 37 AIVRNIPKELHSKDLRKYFSRF 58
G-patch: domain 1 of 1, from 396 to 446: score 61.2, E = 2.6e-16
*->tsniGfklLqKMGWkeGqGLGkneqGivePieakikkdr......aG
++iG +L+KMGWk+G GLGkneqG+v P+ + + d++++++++G
K07B1.7a 396 QKGIGGSMLAKMGWKPGTGLGKNEQGRVVPVAVYVEEDGqsskekTG 442
LGae<-*
+G++
K07B1.7a 443 FGYR 446