Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K07E12.1a
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Query: K07E12.1a CE00713 CAM status:Partially_confirmed TR:Q09165 protein_id:AAA50715.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
fn3 Fibronectin type III domain 351.0 1.3e-101 12
vwa von Willebrand factor type A domain 198.9 1.8e-61 4
PAC PAC motif 124.2 7.2e-34 63
ig Immunoglobulin domain 85.1 6.4e-22 7
EGF EGF-like domain 44.6 6.5e-11 3
DNA_pol3_beta_3 DNA polymerase III beta subunit, C-te 24.6 5e-05 4
sushi Sushi domain (SCR repeat) 12.9 0.11 2
EIN3 Ethylene insensitive 3 10.3 0.078 5
DIX DIX domain 8.3 0.68 1
EB EB module 8.3 1.7 1
PB1 PB1 domain 7.9 0.98 2
Ribosomal_S18 Ribosomal protein S18 7.5 0.92 2
MORN MORN repeat 6.3 9.1 5
NMT_C Myristoyl-CoA:protein N-myristoyltran 6.1 1.1 1
BtpA BtpA family 5.4 1.9 4
succ_DH_flav_C Fumarate reductase/succinate dehydrog 5.1 6.2 1
granulin Granulin 5.0 3.5 2
globin Globin 4.7 4.6 1
GSPII_E_N GSPII_E N-terminal domain 4.7 7.2 1
Utp14 Utp14 protein 4.5 1.4 4
Calcipressin Calcipressin 4.0 4.2 1
Aste_AspA Succinylglutamate desuccinylase / Asp 3.9 2.1 1
Acyl-CoA_dh Acyl-CoA dehydrogenase, C-terminal do 3.8 9.8 1
PKD PKD domain 3.6 6.2 1
LacAB_rpiB Ribose/Galactose Isomerase 3.5 8.6 1
Peptidase_M24 metallopeptidase family M24 3.4 5.9 1
DUF571 Protein of unknown function (DUF571) 2.9 6 1
Band_41 FERM domain (Band 4.1 family) 2.5 5.7 1
Aerolysin Aerolysin/Hemolysin/Leukocidin toxin 2.3 7.6 1
SLAP Bacterial surface layer protein 1.3 7.8 1
p450 Cytochrome P450 1.3 8.8 1
adeno_fiber Adenoviral fiber protein (knob domain 0.5 7.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GSPII_E_N 1/1 92 111 .. 111 130 .] 4.7 7.2
sushi 1/2 112 157 .. 5 62 .] 13.7 0.07
EGF 1/3 163 199 .. 1 45 [] 29.6 1.2e-06
granulin 1/2 186 201 .. 28 43 .] 5.5 2.4
ig 1/7 257 313 .. 1 50 [] 23.0 0.0001
fn3 1/12 331 418 .. 1 84 [] 51.1 2.6e-13
succ_DH_flav_C 1/1 421 433 .. 129 149 .] 5.1 6.2
ig 2/7 452 500 .. 6 50 .] 3.2 31
PKD 1/1 499 515 .. 82 99 .] 3.6 6.2
fn3 2/12 518 605 .. 1 84 [] 45.9 8.7e-12
ig 3/7 635 701 .. 1 50 [] 9.2 0.67
Aerolysin 1/1 733 747 .. 306 320 .] 2.3 7.6
NMT_C 1/1 745 757 .. 95 107 .. 6.1 1.1
DIX 1/1 784 800 .. 11 27 .. 8.3 0.68
fn3 3/12 719 806 .. 1 84 [] 50.8 3.3e-13
ig 4/7 843 910 .. 1 50 [] 2.2 59
sushi 2/2 951 969 .. 3 23 .. -0.3 3.3e+02
p450 1/1 980 1007 .. 461 494 .] 1.3 8.8
fn3 4/12 928 1019 .. 1 84 [] 43.6 3.8e-11
Peptidase_M24 1/1 1081 1107 .. 268 293 .] 3.4 5.9
fn3 5/12 1031 1126 .. 1 84 [] 39.2 7.5e-10
ig 5/7 1156 1203 .. 1 50 [] 20.8 0.00042
fn3 6/12 1221 1311 .. 1 84 [] 52.9 8.2e-14
fn3 7/12 1323 1418 .. 1 84 [] 14.9 0.0077
ig 6/7 1453 1472 .. 1 20 [. 0.7 1.5e+02
fn3 8/12 1519 1624 .. 1 84 [] 41.7 1.4e-10
fn3 9/12 1637 1733 .. 1 84 [] 36.6 4e-09
ig 7/7 1769 1827 .. 1 50 [] 27.8 4.9e-06
fn3 10/12 1878 1925 .. 29 73 .. 1.2 68
fn3 11/12 1942 2017 .. 1 75 [. 39.3 6.9e-10
EGF 2/3 2059 2077 .. 26 45 .] 8.5 1.1
granulin 2/2 2064 2079 .. 28 43 .] 0.1 1.4e+02
PAC 1/63 2172 2194 .. 1 23 [. 1.7 99
PB1 1/2 2278 2294 .. 42 59 .. 4.8 7.5
PAC 2/63 2324 2353 .. 1 31 [. 1.6 1e+02
PAC 3/63 2725 2747 .. 1 23 [. 3.2 36
PAC 4/63 2870 2889 .. 1 20 [. 0.5 2.2e+02
PAC 5/63 3133 3156 .. 1 24 [. 1.4 1.2e+02
PAC 6/63 3226 3255 .. 1 31 [. 0.1 2.9e+02
PAC 7/63 3298 3320 .. 1 23 [. 1.9 86
PAC 8/63 3371 3401 .. 1 32 [. 6.2 4.9
PAC 9/63 3516 3545 .. 1 31 [. 0.4 2.4e+02
PAC 10/63 3588 3610 .. 1 23 [. 0.5 2.1e+02
PAC 11/63 3661 3690 .. 1 31 [. 0.2 2.6e+02
PAC 12/63 3800 3829 .. 1 31 [. 0.0 3e+02
PAC 13/63 3872 3894 .. 1 23 [. 4.8 13
PAC 14/63 3945 3974 .. 1 31 [. 1.7 1e+02
PAC 15/63 4017 4039 .. 1 23 [. 4.1 20
PAC 16/63 4090 4119 .. 1 31 [. 2.3 66
PAC 17/63 4392 4421 .. 1 31 [. 3.5 31
PAC 18/63 4558 4582 .. 6 31 .. 0.4 2.4e+02
PB1 2/2 4772 4800 .. 59 85 .] 2.5 34
PAC 19/63 4935 4958 .. 1 24 [. 4.0 21
Aste_AspA 1/1 4990 5012 .. 303 327 .. 3.9 2.1
PAC 20/63 5258 5280 .. 1 23 [. 0.3 2.5e+02
PAC 21/63 5402 5424 .. 1 23 [. 4.2 19
PAC 22/63 5475 5504 .. 1 31 [. 3.6 29
PAC 23/63 5547 5569 .. 1 23 [. 3.9 23
SLAP 1/1 5586 5626 .. 36 77 .. 1.3 7.8
PAC 24/63 5745 5768 .. 1 24 [. 0.7 1.9e+02
PAC 25/63 6043 6065 .. 1 23 [. 2.3 67
PAC 26/63 6116 6145 .. 1 31 [. 1.4 1.2e+02
PAC 27/63 6210 6233 .. 7 31 .. 2.0 81
Utp14 1/4 6260 6270 .. 785 795 .] 2.0 6.4
PAC 28/63 6478 6507 .. 1 31 [. 3.6 29
vwa 1/4 6554 6661 .. 1 123 [. 18.4 7.5e-05
EIN3 1/5 6803 6825 .. 1 23 [. 2.1 12
MORN 1/5 6873 6882 .. 14 23 .] 4.2 36
PAC 29/63 6870 6899 .. 1 31 [. 0.1 2.9e+02
PAC 30/63 7040 7063 .. 1 24 [. 1.4 1.2e+02
PAC 31/63 7295 7324 .. 1 31 [. 1.7 1e+02
PAC 32/63 7368 7397 .. 1 31 [. 2.8 50
DNA_pol3_beta_3 1/4 7430 7445 .. 1 16 [. 6.2 3.9
BtpA 1/4 7437 7455 .. 1 19 [. 1.4 24
EIN3 2/5 7522 7544 .. 1 23 [. 2.1 12
MORN 2/5 7592 7601 .. 14 23 .] 4.2 36
PAC 33/63 7589 7618 .. 1 31 [. 0.1 2.9e+02
PAC 34/63 7656 7679 .. 7 31 .. 1.5 1.1e+02
Utp14 2/4 7704 7716 .. 783 795 .] 2.4 5
PAC 35/63 7707 7736 .. 1 31 [. 1.3 1.3e+02
PAC 36/63 7779 7801 .. 1 23 [. 3.2 36
PAC 37/63 7852 7882 .. 1 32 [. 1.0 1.6e+02
PAC 38/63 8069 8098 .. 1 31 [. 0.1 2.9e+02
PAC 39/63 8142 8171 .. 1 31 [. 2.8 50
DNA_pol3_beta_3 2/4 8204 8219 .. 1 16 [. 6.2 3.9
BtpA 2/4 8211 8229 .. 1 19 [. 1.4 24
EIN3 3/5 8296 8318 .. 1 23 [. 2.1 12
MORN 3/5 8366 8375 .. 14 23 .] 4.2 36
PAC 40/63 8363 8392 .. 1 31 [. 0.1 2.9e+02
PAC 41/63 8430 8453 .. 7 31 .. 1.5 1.1e+02
Utp14 3/4 8478 8490 .. 783 795 .] 2.4 5
PAC 42/63 8481 8510 .. 1 31 [. 1.3 1.3e+02
PAC 43/63 8553 8575 .. 1 23 [. 3.2 36
PAC 44/63 8838 8868 .. 1 31 [. 1.3 1.3e+02
PAC 45/63 8896 8923 .. 1 29 [. 1.9 87
PAC 46/63 8968 8997 .. 1 31 [. 3.6 29
PAC 47/63 9041 9068 .. 1 29 [. 1.9 87
PAC 48/63 9113 9142 .. 1 31 [. 3.6 29
DNA_pol3_beta_3 3/4 9248 9263 .. 1 16 [. 6.2 3.9
BtpA 3/4 9255 9273 .. 1 19 [. 1.4 24
EIN3 4/5 9340 9362 .. 1 23 [. 2.1 12
MORN 4/5 9410 9419 .. 14 23 .] 4.2 36
PAC 49/63 9407 9436 .. 1 31 [. 0.1 2.9e+02
PAC 50/63 9577 9600 .. 1 24 [. 1.4 1.2e+02
PAC 51/63 9832 9861 .. 1 31 [. 1.7 1e+02
PAC 52/63 9905 9934 .. 1 31 [. 2.8 50
DNA_pol3_beta_3 4/4 9967 9982 .. 1 16 [. 6.2 3.9
BtpA 4/4 9974 9992 .. 1 19 [. 1.4 24
EIN3 5/5 10059 10081 .. 1 23 [. 2.1 12
MORN 5/5 10129 10138 .. 14 23 .] 4.2 36
PAC 53/63 10126 10155 .. 1 31 [. 0.1 2.9e+02
PAC 54/63 10193 10216 .. 7 31 .. 1.5 1.1e+02
Utp14 4/4 10241 10253 .. 783 795 .] 2.4 5
PAC 55/63 10244 10273 .. 1 31 [. 1.3 1.3e+02
PAC 56/63 10316 10338 .. 1 23 [. 2.5 59
adeno_fiber 1/1 10409 10414 .. 248 253 .] 0.5 7.7
PAC 57/63 10604 10626 .. 1 23 [. 2.5 59
PAC 58/63 10894 10923 .. 1 31 [. 2.0 84
PAC 59/63 11091 11114 .. 1 24 [. 1.3 1.3e+02
Ribosomal_S18 1/2 11276 11287 .. 19 30 .. 4.2 9.7
PAC 60/63 11307 11330 .. 1 24 [. 1.5 1.1e+02
PAC 61/63 11596 11619 .. 1 24 [. 2.6 53
PAC 62/63 11810 11833 .. 1 24 [. 1.6 1e+02
PAC 63/63 11977 12006 .. 1 31 [. 6.0 5.9
Calcipressin 1/1 12097 12113 .. 259 275 .] 4.0 4.2
Ribosomal_S18 2/2 12130 12151 .. 1 22 [. 3.2 19
LacAB_rpiB 1/1 12134 12166 .. 49 83 .] 3.5 8.6
vwa 2/4 12122 12270 .. 1 160 [. 93.4 2.1e-28
globin 1/1 12268 12290 .. 1 27 [. 4.7 4.6
Acyl-CoA_dh 1/1 12409 12423 .. 1 16 [. 3.8 9.8
Band_41 1/1 12459 12466 .. 203 210 .] 2.5 5.7
vwa 3/4 12334 12508 .. 1 189 [] 104.2 9e-32
vwa 4/4 12567 12723 .. 4 173 .. 3.8 2.8
fn3 12/12 12773 12790 .. 5 22 .. 1.1 75
DUF571 1/1 12898 12917 .. 1 20 [. 2.9 6
EB 1/1 12929 12941 .. 48 63 .] 8.3 1.7
EGF 3/3 12947 12976 .. 1 39 [. 20.9 0.00033
Alignments of top-scoring domains:
GSPII_E_N: domain 1 of 1, from 92 to 111: score 4.7, E = 7.2
*->verddldrlieqlypragsv<-*
v++d l rli q+y+++g +
K07E12.1a 92 VPPDNLRRLIIQYYRQQGKH 111
sushi: domain 1 of 2, from 112 to 157: score 13.7, E = 0.07
*->dieNGrvsssgtyeypvGdtvtytCneGYrlvG.sssitCtedggGg
++ N+++s++ ++ + v y C+ GY++v + +++ C++ +
K07E12.1a 112 QPKNATFSPK-SFLF-----VKYHCDYGYEMVDeVDTMFCQDK---K 149
WsppllGelPkC<-*
W ++ P C
K07E12.1a 150 WVMTP----PMC 157
EGF: domain 1 of 3, from 163 to 199: score 29.6, E = 1.2e-06
*->Capnn.pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<
Ca +n++Cs+ tC+++ + ++ +C+Cp G + l+ + k+C
K07E12.1a 163 CAADNgGCSH--TCISYND------EKIECKCPRG-MTLDVDEKTC 199
-*
K07E12.1a - -
granulin: domain 1 of 2, from 186 to 201: score 5.5, E = 2.4
*->CPqGfhCdadggrClq<-*
CP+G + d+d ++C++
K07E12.1a 186 CPRGMTLDVDEKTCIK 201
ig: domain 1 of 7, from 257 to 313: score 23.0, E = 0.0001
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le........tsslslti.
G+ +++C++ + p p+++W++n+k ++++++++ + s l i+
K07E12.1a 257 GGNINISCTSV--AYPfPdIYWFKNQKvNTdgpdqntlRASQILIIk 301
svtpeDsgGtYtCvv<-*
++ ++tCv
K07E12.1a 302 EIYRNE---EFTCVS 313
fn3: domain 1 of 12, from 331 to 418: score 51.1, E = 2.6e-13
*->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge.
P+ l+ + + tslt++W+pp+ n+pit Y++ y n++++
K07E12.1a 331 PGSAPHLKSASAGRTSLTVRWEPPSiINRPITTYTLYY-T--NNPQq 374
....wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
+ ++w+ l v+ +t+++ + +L+P+t Y +rV+A + G+G+
K07E12.1a 375 pvknWKKLEVKEPTREVAIPDLRPDTAYYIRVRANDPLGpGKLG 418
succ_DH_flav_C: domain 1 of 1, from 421 to 433: score 5.1, E = 6.2
*->ViittldknEvdaipPkeRvY<-*
V+i+tl+ P++R Y
K07E12.1a 421 VQIKTLK--------PAVRPY 433
ig: domain 2 of 7, from 452 to 500: score 3.2, E = 31
*->LtCsvsgfgpp.p.vtWlrngk.le..tsslslti.svtpeDsgGtY
+ C v+ ++p p + Wl+ g++l +++ + ++ +++ s + +
K07E12.1a 452 IDCNVT-RADPvPvLVWLHKGRpLNkgSKTQHIKMkNGGVLES-TQF 496
tCvv<-*
+Cv+
K07E12.1a 497 SCVA 500
PKD: domain 1 of 1, from 499 to 515: score 3.6, E = 6.2
*->tvsNgvgsasattttvtV<-*
+++N++g ++++ ++vtV
K07E12.1a 499 VAENEAGKSTKK-INVTV 515
fn3: domain 2 of 12, from 518 to 605: score 45.9, E = 8.7e-12
*->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge.
PsaP+++ + + +tl+W+pp ngp gY v y ++ + ++
K07E12.1a 518 PSAPERI-RYQIDGDKVTLQWEPPQiTNGPMAGYDVFY-TEDPSLPr 562
...wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
++ +++ + ++++++ t+ L++ t+Y++ ++ +n+ G+G +S
K07E12.1a 563 dqwKVHHIDDPNARTTTVLRLNEKTPYTFVIVGRNRLGpGLPS 605
[output cut off at A = 10 top alignments]