Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K07F5.2
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Query: K07F5.2 CE03853 locus:msp-10 major sperm protein status:Confirmed TR:Q27280
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 128.4 2.3e-36 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MSP_domain 1/1 9 126 .. 1 138 [] 128.4 2.3e-36
Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 9 to 126: score 128.4, E = 2.3e-36
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
+++++P+ ++ vf + p+d++ +t++++++N s +ri + +KtTn+
K07F5.2 9 DIQTQPNAKI-VFNA--PYDDK-HTYHIKVINSSARRIGYGIKTTNM 51
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
k++ V+P++G+l+P+e v +av+ +++f+ ++ d+n+d+++v+
K07F5.2 52 KRLGVDPPCGVLDPKEAVLLAVS------CDAFAFGQE--DTNNDRITVE 93
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
++++p+++a+ +++ ++++ +++ v+++++p++++
K07F5.2 94 WTNTPDGAAK------QFRREWFQGDGM--VRRKNLPIEYN 126