hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K07F5.6
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Query:  K07F5.6  CE06121   protein-tyrosine phosphatase status:Partially_confirmed TR:Q21291 protein_id:CAA94276.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              198.0    1.5e-55   1
GspL          General secretion pathway protein L (Gs     5.4       0.81   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
GspL            1/1     279   296 ..   379   396 .]     5.4     0.81
Y_phosphatase   1/1     167   466 ..     1   274 []   198.0  1.5e-55

Alignments of top-scoring domains:
GspL: domain 1 of 1, from 279 to 296: score 5.4, E = 0.81
                   *->ylaVqqGemaqegdrVsG<-*
                      +++V+ G+ a ++d+++G
     K07F5.6   279    GFPVPIGQIAHNRDQIQG    296

Y_phosphatase: domain 1 of 1, from 167 to 466: score 198.0, E = 1.5e-55
                   *->NkeKNRykdilpyDhtRVkLk..........egsDYINAnyidgpqs
                       ++KNR+k+   +D+tRV+L++++++++++++++ YINA++i++
     K07F5.6   167    SLSKNRSKNHKLNDNTRVILSpentensrtdPPDTYINASHIKF--- 210

                   rtlvvykkpkayIaTQgPlpnTieDFWrMvweqkvtv.............
                        ++++k++I+TQ Plp+T+ DFWrMv   kvt   +  ++++++
     K07F5.6   211 -----DNSQKEFIVTQYPLPDTVRDFWRMVSIMKVTQivtifepqtdeai 255

                   .....................................IVMLtklvEkgre
                   ++ ++++ +   + ++++ ++ ++ + + ++  ++++ ++  ++  ++
     K07F5.6   256 eefrnptltlaapaptstmttiggfpvpigqiahnrdQIQGQSIRCESN- 304

                   eeKtCaqYWPeeggeeggsltyGditVtlvseekk.....ddddytvRtl
                    ++  + ++P+   e + +++ ++  ++++ +++++++++++++ytv++
     K07F5.6   305 -VH-RSSFFPL---ETDHYMNLKGWLINTRRVTVDhrnkgWMNKYTVEVV 349

                   eltn.gdeskneakqeklkgetrtVthyhytgWPDhgvPesgpkslldfl
                      +++                 + ++y +t+WP  + P++  k +l+++
     K07F5.6   350 AEGCsE---------------ATFAKVYNCTTWPWKKYPDD-EKKVLALV 383

                   rkvrksqsqenes.geaspdsgprSsctgPivVHCSAGiGRTGtfiaidi
                   r   k +s   +s +++  +         PivV+C  G  R++t+++ +i
     K07F5.6   384 RAPYKDTS---TSlIANLEKLA-------PIVVMCDLGLDRSATVVLTSI 423

                   llqqleaegvvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
                   +++q+ a++++ d   + k++R+qR+g +++   Y + ++a+l
     K07F5.6   424 IIDQIIAGKTP-DCDALFKKMRDQRAGVFTMSIFYTYAIRAALF    466

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