Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08A2.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: K08A2.5 CE21034 nuclear hormone receptor status:Partially_confirmed TR:Q9N5J5 protein_id:AAF39914.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
hormone_rec Ligand-binding domain of nuclear hormon 99.8 7.6e-30 1
Glt_symporter Sodium/glutamate symporter 10.8 0.033 1
DUF156 Uncharacterized BCR, COG1937 4.1 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF156 1/1 25 41 .. 48 64 .] 4.1 7.8
Glt_symporter 1/1 185 195 .. 368 378 .] 10.8 0.033
hormone_rec 1/1 60 232 .. 22 203 .] 99.8 7.6e-30
Alignments of top-scoring domains:
DUF156: domain 1 of 1, from 25 to 41: score 4.1, E = 7.8
*->eaeqslaellealkall<-*
++++s++ l++al++++
K08A2.5 25 GRTASVEQLIAALRRYV 41
Glt_symporter: domain 1 of 1, from 185 to 195: score 10.8, E = 0.033
*->NMqaVTerFGp<-*
NM++VT+rFG+
K08A2.5 185 NMTSVTSRFGN 195
hormone_rec: domain 1 of 1, from 60 to 232: score 99.8, E = 7.6e-30
*->leDQiiLLkhswlelllLrlayrsykekkataDgsdtllfpdGtdid
++D+ +LLk++ +++++++a r+ + + d +++++ ++i+
K08A2.5 60 IHDKTTLLKSVIGPFTIFNIAARTAQISD-----GDLICLCNKSTIN 101
rdsl.........gsselirrifelliklrvnvlaplieLkldeeEyalL
r+ +++ +++ g++ r i +l+ + + +L l++ E+ L
K08A2.5 102 RQPArhlldtnlvGNNFVGRVIDDLVFPTK--------KLALTNPEITIL 143
kAIvLfnPsdvpgLsesarelveklqekylsaLlqycllnypd.slssdg
+A+++++P d++gLs++ + + +++++++aL++ ++ n ++ + +
K08A2.5 144 SALIILDP-DARGLSQETSQALLGIRDRVQNALFNLIRDNSNNmT---SV 189
psRFakLLlllpvlrslssdlkehlfflkrlfnlpkvppLlkell<-*
+sRF++LLll+p l +lss++ e+ ++l + f ++Ll el+
K08A2.5 190 TSRFGNLLLLFPPLAKLSSLIGEN-VQLAKMF-GIPIDSLLVELY 232