Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08C7.5
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Query: K08C7.5 CE06138 locus:fmo-12 dimethylaniline monooxygenase status:Confirmed TR:Q21310 protein_id:CAA94290.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FMO-like Flavin-binding monooxygenase-like 502.3 3.6e-147 1
pyr_redox Pyridine nucleotide-disulphide oxidoredu 24.4 2.9e-06 2
DAO FAD dependent oxidoreductase 10.8 0.054 1
NAD_Gly3P_dh NAD-dependent glycerol-3-phosphate dehyd 4.8 1.8 1
NifZ NifZ domain 4.5 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NAD_Gly3P_dh 1/1 3 13 .. 1 11 [. 4.8 1.8
DAO 1/1 4 16 .. 1 13 [. 10.8 0.054
pyr_redox 1/2 5 40 .. 1 47 [. 12.1 0.01
pyr_redox 2/2 156 216 .. 133 203 .. 12.2 0.0096
NifZ 1/1 308 318 .. 56 67 .. 4.5 8.6
FMO-like 1/1 3 492 .. 1 491 [. 502.3 3.6e-147
Alignments of top-scoring domains:
NAD_Gly3P_dh: domain 1 of 1, from 3 to 13: score 4.8, E = 1.8
*->pkkvtVlGaGa<-*
+k+v+V+GaGa
K08C7.5 3 NKRVAVIGAGA 13
DAO: domain 1 of 1, from 4 to 16: score 10.8, E = 0.054
*->mdvvVIGgGViGl<-*
++v+VIG+G++Gl
K08C7.5 4 KRVAVIGAGASGL 16
pyr_redox: domain 1 of 2, from 5 to 40: score 12.1, E = 0.01
*->dvvIIGgGpAGlaAAiraaragflGrkrlkvalvEkepplkrgtlGG
+v++IG+G+ Gl ++ +G +v+++E+ + +GG
K08C7.5 5 RVAVIGAGASGLPSIRHGLL---YG---FDVTCFEAS-----DDIGG 40
<-*
K08C7.5 - -
pyr_redox: domain 2 of 2, from 156 to 216: score 12.2, E = 0.0096
*->rprippipGvpgflfaglegvfglrtsddAlalrevpkgkrvvVvGG
+p+ +p g ++++g+++ + +++ + +++k vvVvG
K08C7.5 156 WPKPFP----------GQNEFKGRIVHSHDYKDHKGYEDKVVVVVGI 192
GyIGlElAaalarlGaeVTvverr<-*
G+ G+++A + +r++++V++v rr
K08C7.5 193 GNSGIDVAVEQSRIAKQVYLVTRR 216
NifZ: domain 1 of 1, from 308 to 318: score 4.5, E = 8.6
*->YaVhFlerGriV<-*
Ya+hF e+G+iV
K08C7.5 308 YAIHF-EDGTIV 318
FMO-like: domain 1 of 1, from 3 to 492: score 502.3, E = 3.6e-147
*->aKkVAVIGAGVSGLaSiKCCLeEGILEPtCFERSdDIGGLWrFtEnv
K+VAVIGAG SGL Si+ L G ++tCFE SdDIGGLWr + +
K08C7.5 3 NKRVAVIGAGASGLPSIRHGLLYG-FDVTCFEASDDIGGLWRYKSHE 48
EeGrASiYKSvvtNvsKEMsCYSDFPfPedyPNFmhnskilEYLrmfAke
S+ K v+N+sKEM YSDF e NFmhn + l Y++ +A++
K08C7.5 49 TNES-SVMKTTVINTSKEMTAYSDFTPQENLANFMHNNEMLNYFKSYAEH 97
FdLLKYIQFkTtVcSVkKrPDFstsGQWeVvTes.eGKqesaVFDAVMVC
+L K+I V+++ + G W V +++e+K+ + +FD V VC
K08C7.5 98 HGLMKHIKLRHRVLNIERSKNYDNDGTWKVIYQTpEEKTLEEIFDGVLVC 147
TGhhtnPhLPLeSFPGiekFKGqyFHSrdYKhPegFlGKRVlVIGlGNSG
+Ghh Ph P ++FPG + FKG + HS dYK g ++K V+V+G+GNSG
K08C7.5 148 SGHHAIPHWP-KPFPGQNEFKGRIVHSHDYKDHKGYEDKVVVVVGIGNSG 196
gDiAvELSrtAeqVflStRtGsWVLsRvsdrGYPwdmvfhtRFpsflsni
D AvE Sr A+qV l tR+G+W ++ rG P d tRF s+ ++
K08C7.5 197 IDVAVEQSRIAKQVYLVTRRGTWLIPKLETRGLPFDIIMNTRFFSLYKL- 245
LptyisnwlmFekqLNnrfnHenYGLapknrslrKEPvvNDeLPnRILtG
p++ +n l+ e +N r +H YGL+p +r+ + +P +NDeLPnRI G
K08C7.5 246 FPQAMLNSLV-EYRINQRIDHDLYGLKPAHRVFSAHPSLNDELPNRIANG 294
aVkvkpsVKeltEtSAiFeDGtveEdIDvViFATGYtFsFPFLeE.slVk
V +kp++K + + FeDGt+ +D V+ TG++F F e + lV
K08C7.5 295 TVRIKPNIKKFDGYAIHFEDGTIVPHVDEVVMSTGFSFEFNLIEHgKLVP 344
vevnkvsLYKyvFP.phLekpTLaiiGLIqplGsiiptvelQaR.WAvqV
v n+v L+Ky+FP + L iiGLIqp Gsi+p +e+QaR +
K08C7.5 345 VSENEVDLFKYMFPvATSDHNSLCIIGLIQPFGSIMPVSEQQARvFFANM 394
fKGlckLPsfskMmeeItekkEkkikrfGnsqltavqtDYIeYmdelakf
+ G + +P s M e++ kkE + f++s ++++q DYI Ymdela+
K08C7.5 395 VSGNNLIPKKSQMSEDVLNKKEAMAQQFVKSRRHTIQVDYIPYMDELAEL 444
igaKPnlpsllLtDPkLAlevfFGPCsPyqyRLtGPGkWeGARnAILT<-
ig l+ l+tDP L l +fFGP y yRL GP W GARnAILT
K08C7.5 445 IGCQVPLLRTLFTDPVLGLRLFFGPNAGYCYRLAGPHTWNGARNAILT 492
*
K08C7.5 - -