Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08D8.3
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Query: K08D8.3 CE21042 status:Partially_confirmed TR:Q21329 protein_id:CAA97434.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF141 Domain of unknown function DUF141 151.1 1.9e-41 1
CUB CUB domain 3.8 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF141 1/1 17 135 .. 1 138 [] 151.1 1.9e-41
CUB 1/1 431 461 .. 85 116 .] 3.8 7.1
Alignments of top-scoring domains:
DUF141: domain 1 of 1, from 17 to 135: score 151.1, E = 1.9e-41
*->aagftCipggpitinkpvnisnpgfyPagwnessskippqfpanqnC
++g++C +g i i++p+++++++++P++wn+s++ p ++ qnC
K08D8.3 17 SSGYQC-QGP-IKISPPDDLTRTVYWPSIWNDSMP--PIPIATQQNC 59
swtinvPkGyyAkltlsakttisagddkddsitvtdsngnlekvtsntgs
+w+i vP+G yA+ +++++++ + ++ i v ++ng +e + + +
K08D8.3 60 KWEIAVPDGLYATAVFYKNAK-----N-NVAIAVGYPNGLQEGLDN---M 100
dlespyyFvspkftinlstgnSVsndgnvtFgFsvqwsplp<-*
d++ py+F+sp+f inl+ + g+++F F+v+ws++p
K08D8.3 101 DYN-PYIFTSPQFLINLYKSA-----GDGSFSFKVTWSKYP 135
CUB: domain 1 of 1, from 431 to 461: score 3.8, E = 7.1
*->gkPedirStsnrmlikFvsDasvskrGFkAty<-*
+++ +++ ++++ ik+ + ++v+ GF++++
K08D8.3 431 PPATTVSVQGDTYHIKYFT-NGVNTTGFRIDF 461