Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08E5.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: K08E5.2 CE28598 Yeast ORF YCR37C status:Partially_confirmed SW:Q21339 protein_id:CAA83225.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Na_sulph_symp Sodium:sulfate symporter transmembrane 255.1 9.5e-73 1
DUF590 Protein of unknown function, DUF590 6.8 0.6 1
DUF230 Poxvirus proteins of unknown function 4.4 7.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF230 1/1 92 108 .. 124 140 .] 4.4 7.2
DUF590 1/1 297 318 .. 266 287 .] 6.8 0.6
Na_sulph_symp 1/1 4 478 .. 30 585 .] 255.1 9.5e-73
Alignments of top-scoring domains:
DUF230: domain 1 of 1, from 92 to 108: score 4.4, E = 7.2
*->pfviplgliaviflila<-*
p++i lg++ v++l+++
K08E5.2 92 PKWIMLGFMTVTALLSS 108
DUF590: domain 1 of 1, from 297 to 318: score 6.8, E = 0.6
*->llswvIPdvPrevrdqirReky<-*
+l +v+P++ +++++i++e++
K08E5.2 297 FLLFVLPSERPDLATYIKKEDL 318
Na_sulph_symp: domain 1 of 1, from 4 to 478: score 255.1, E = 9.5e-73
*->pkAWhlfAifiamIvGlIlePvPlgviALiaislsavltgtlsfene
+++W +++ +v + e Pl+v+A+ +++l+++++ ++
K08E5.2 4 RHEWKCAYCVCIIAVYWMSEVMPLAVTAMLPVVLFPLVGVLDA---- 46
elaqpGFkatakalswalsGFsntttWLvfgAFflaaGfekTGLGkRIAL
+ ++ n+t+ L++g+++ aa++ek L++R+AL
K08E5.2 47 --------------NTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVAL 82
vlvkaiGkrtalLgLGYalVfsdLlLaPaiPSnRTARaGGIifPviksLp
+++ +G+ + + LG+++V++ L+ ++++++ TA++++I v+++L
K08E5.2 83 SVLRCVGSEPKWIMLGFMTVTALLSSFISNTAT-TAMMVPIGQSVVQQLI 131
vsqnVEeGlfgStpekgEpsPQKEvtKlDNGQalpvpsapEdehltQese
+f+ p +g E+ +l
K08E5.2 132 S-------SFQHHPTNG-----------------------ERGRL---GC 148
rkiGayLmltvyqstsItSamFLTAmApNlLllglmnkLFPilGneisWa
+k + +L l+++ ++ I++ ++ T++ Nl+ lg+ + LFP + ++ +
K08E5.2 149 KKMATGLVLSICFAANIGGTGTATGTPSNLVMLGQLSALFPKVDGSLNYV 198
sWflAAlppGiilLllvPLllYvLyPPeiksspFGigEkeeEqqQdakri
W +A p+++++L++++ l ++ +++ ++ +
K08E5.2 199 TWIFFAYPLMLLCLFVAWMTLVSFFLRDAPEKD-----------EAVTEM 237
AkteLkemGPmsfrEktllvlflLlLlLWiFggPGFFlGWGnlvslgakG
kt++ e+ +m+ +Ek ++v f +lL LW+F++PG +G G + ga
K08E5.2 238 LKTRYNELPRMTYAEKSVFVCFCILLSLWVFRNPGVVPGFGVFFKKGA-- 285
esMidAttVAiivlvlllllrskiPGLt.....QDPenPGkLKAPpaivt
++t A iv ll++l+s P L + ++ D ++ G +++
K08E5.2 286 ---YTDATSAMIVAFLLFVLPSERPDLAtyikkEDLKKRGC------LMD 326
WkKDivknktAWNTliwlGgLiaLAggLnksGfieWlGnklvtllslagl
Wk +++++ +W ++++lGg++aLA g ++sG++ +Gn+l+++ +
K08E5.2 327 WK--TMQETFPWSVVLLLGGGFALAAGVKESGLSLLIGNSLSSIEH---- 370
splmafivLilllylsHYfFASatAhtaAmlPiflavaqaipGaPpllla
pl + L l + + S+t + ++++Pi +++aq + G+ p+ l+
K08E5.2 371 LPLWILQLLTMLIAMVITNICSNTVTASIFVPIVATLAQRA-GHHPFTLM 419
LlLafassLgGflTPYgtGPnpiyFGsGyvkvkdwWrlGfilsIigliiw
L+ ++ass++ f+ P+gt+Pn+i+FGsG vkv+d++ +G +Ii+l ++
K08E5.2 420 LPTTLASSFA-FIFPVGTPPNAIVFGSGMVKVSDMAFVG---GIISLELL 465
llvGalWWkaLglw<-*
+l+ l+ + ++++
K08E5.2 466 VLTV-LYMNSIAYL 478