Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08F4.8
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Query: K08F4.8 CE06156 locus:msp-38 major sperm protein MSP-38 status:Confirmed SW:P53020 protein_id:CAA93089.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 119.0 1.3e-33 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MSP_domain 1/1 9 126 .. 1 138 [] 119.0 1.3e-33
Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 9 to 126: score 119.0, E = 1.3e-33
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
+++++P +++ vf + p+d++ +t +++++N s +ri + +KtTn+
K08F4.8 9 DIQTQPGTKI-VFNA--PYDDK-HTDHIKVINSSARRIGYGIKTTNM 51
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
k++ V+P++G+ +P+e v +av+ +++f+ ++ d+n+d+++v+
K08F4.8 52 KRLGVDPPCGVFDPKEAVLLAVS------CDAFAFGQE--DTNNDRITVE 93
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
++++p+++a+ +++ ++++ +++ v+++++p++++
K08F4.8 94 WTNTPDGAAK------QFRREWFQGDGM--VRRKNLPIEYN 126