Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08F8.2
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Query: K08F8.2 CE03468 transcription factor status:Partially_confirmed TR:Q21361 protein_id:CAA91284.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
bZIP bZIP transcription factor 28.5 1.4e-06 2
bZIP_Maf bZIP Maf transcription factor 10.5 0.091 1
HALZ Homeobox associated leucine zipper 6.0 3.3 1
K-box K-box region 5.8 2.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
bZIP 1/2 60 100 .. 9 49 .. 7.5 1.3
K-box 1/1 359 377 .. 87 105 .] 5.8 2.1
bZIP_Maf 1/1 357 383 .. 138 167 .. 10.5 0.091
bZIP 2/2 335 391 .. 9 65 .] 29.4 7.9e-07
HALZ 1/1 367 392 .. 20 45 .] 6.0 3.3
Alignments of top-scoring domains:
bZIP: domain 1 of 2, from 60 to 100: score 7.5, E = 1.3
*->RkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrkel<-*
R+ +N A+rrsR+++++ eek+ L+aeN++L++ l
K08F8.2 60 RRRRNNDASRRSREKRRQNDLAMEEKIMLLSAENERLKSQL 100
K-box: domain 1 of 1, from 359 to 377: score 5.8, E = 2.1
*->kKErelqeeNkaLrkKiee<-*
++ + l+ eN++Lr +ie
K08F8.2 359 RRVQLLEGENEDLRTQIET 377
bZIP_Maf: domain 1 of 1, from 357 to 383: score 10.5, E = 0.091
*->RaKRvqQkheLEkeKaqLaqQleqLkeEvs<-*
R++Rvq LE e+ L++Q+e+Lk+E++
K08F8.2 357 RSRRVQ---LLEGENEDLRTQIETLKAEIA 383
bZIP: domain 2 of 2, from 335 to 391: score 29.4, E = 7.9e-07
*->RkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrkelerLkke
R+ +N eAA+r+R+ ++a e ++v+ Le+eN++Lr +e+Lk e
K08F8.2 335 RRRRNNEAAKRCRANRRAVFEYRSRRVQLLEGENEDLRTQIETLKAE 381
vakLksenee<-*
+a ks +
K08F8.2 382 IAHFKSVLAQ 391
HALZ: domain 1 of 1, from 367 to 392: score 6.0, E = 3.3
*->endsLqkendeLrAevlslkeklqde<-*
en+ L+ + + L+Ae+ k++l ++
K08F8.2 367 ENEDLRTQIETLKAEIAHFKSVLAQR 392