Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08F8.3
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Query: K08F8.3 CE03469 locus:fut-1 fucosyltransferase status:Partially_confirmed TR:Q21362 protein_id:CAA91285.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_transf_10 Glycosyltransferase family 10 (fucosy 873.4 7.1e-259 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.4 2.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C3HC4 1/1 411 421 .. 1 11 [. 3.4 2.9
Glyco_transf_10 1/1 22 435 .. 1 502 [] 873.4 7.1e-259
Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 411 to 421: score 3.4, E = 2.9
*->CrICleelkep<-*
C++C++ ++ep
K08F8.3 411 CQVCRMAWTEP 421
Glyco_transf_10: domain 1 of 1, from 22 to 435: score 873.4, E = 7.1e-259
*->lsdaflrllwrekllGllitvppLllaiaawigleeikewkksplyL
++d+flr+lw++++++++it +ll+i+a+i+++e+k+wk+++++L
K08F8.3 22 VDDRFLRFLWKYLMFACCIT---YLLVIYAPISKSEQKDWKEGEIEL 65
SNDHELdVpiLlilSqapqGSrfptleenrillwtwpFndrg.aPvppsr
SNDHELdVpiL++++++pq ++p++een+++++t++Fn++g++P+++++
K08F8.3 66 SNDHELDVPILQKEELKPQ--QRPSFEENVPKKKTFNFNPVGkEPFDVEE 113
cslsydntarcrltanRselesAdavlFNAGHhrDlskgppmdlppeftq
+++s+d+++++r+ta+++++++++++++NAGH++D+++g+p d+++eftq
K08F8.3 114 VLTSSDIKLEERMTATVIPGQKRLILSWNAGHSQDNLQGCP-DWNCEFTQ 162
vrarAedaDavllayednaaaaeaLatdfpRppgQpwVwaSmESPsnsgR
vrarA+daDavl+a++dn df+++p+Q++V++S+ESP+ns
K08F8.3 163 VRARAPDADAVLIAHMDN---------DFVPKPNQYVVYFSQESPANS-- 201
FAVPGFKiNVLNglqilldgyfNwtlSyradsDafhpYGylepltakark
g+qi++++y+N+tl++r+d++a++pYGy+++l+ak+rk
K08F8.3 202 ------------GIQIPRPDYINMTLGFRHDTPAGSPYGYTVKLGAKSRK 239
RGFKVqsqvVeaplnlsaKaklaAWVVSNcntrskRerfykqLkkHlqVD
++qvV+a+l +++Kak+aAW+VS+c+t+skRe+f+k+L+kHlq+D
K08F8.3 240 -----TGQVVDANL-VNGKAKGAAWFVSHCQTNSKREDFVKKLQKHLQID 283
vyGrvanplplksgcskGVelietlsqYkFYLaFENSqheDYvTEKlWkN
+yG+ ++p+++++g+sk ++++++++Y+FY++FENS++eDYvTEKlWk+
K08F8.3 284 IYGG-CGPMKCARGDSK--CDTMLDTDYHFYVTFENSICEDYVTEKLWKS 330
AlqagtiPvVLgPsRavyedFvPpksFIhVDDFkSakElAdYLlyLdknp
++q+++iP+VL+ R+++e+FvPp+sFI++DDFkS+kE++dYL+yL++n+
K08F8.3 331 GYQNTIIPLVLK--RKLVEPFVPPNSFIAIDDFKSVKEMGDYLNYLMNNK 378
tAYLDmLYENPLNTLDGKAYFYQDLSFKKILDFFKTILENDTIYHKYseY
tA Y+eY
K08F8.3 379 TA--------------------------------------------YMEY 384
FeWRedlrvrlfswdalrVlEydegfCrvCrllqkapdllelSryktipn
FeWR+d++v+++++++++VlE+++gfC+vCr+++++p+ ++++ipn
K08F8.3 385 FEWRHDYKVVFLDGSHHDVLERPWGFCQVCRMAWTEPR-----QKVLIPN 429
lakWFq<-*
++++++
K08F8.3 430 WDAYWR 435