hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K09A9.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  K09A9.6  CE11982   aspartyl beta hydroxylase like status:Confirmed TR:Q93178 protein_id:CAB01887.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Asp_Arg_Hydrox Aspartyl/Asparaginyl beta-hydroxylase    439.7   2.5e-128   1
TPR            TPR Domain                                20.0     0.0007   4
FrhB_FdhB_C    Coenzyme F420 hydrogenase/dehydrogenas     3.9          4   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
TPR              1/4     466   484 ..    16    34 .]     4.0       26
FrhB_FdhB_C      1/1     501   518 ..   172   195 .]     3.9        4
TPR              2/4     492   520 ..     1    29 [.     2.2       82
TPR              3/4     571   597 ..     8    34 .]     6.3      5.7
TPR              4/4     636   662 ..     1    27 [.     7.8      2.1
Asp_Arg_Hydrox   1/1     636   871 ..     1   264 []   439.7 2.5e-128

Alignments of top-scoring domains:
TPR: domain 1 of 4, from 466 to 484: score 4.0, E = 26
                   *->kydeAieayekALeldPnn<-*
                      +y+eA e ++ ++++ P +
     K09A9.6   466    QYEEAMELFDHVIAVYPAS    484

FrhB_FdhB_C: domain 1 of 1, from 501 to 518: score 3.9, E = 4
                   *->iEikeiieLRkgdvkpgleiveKL<-*
                      iE +e+      d+ + +ei+eK+
     K09A9.6   501    IEADET------DRDKAIEIYEKI    518

TPR: domain 2 of 4, from 492 to 520: score 2.2, E = 82
                   *->aeayynlGnaylklgkydeAieayekALe<-*
                      a+ay  +G +     + d+Aie yek L+
     K09A9.6   492    ARAYDIRGEIEADETDRDKAIEIYEKILQ    520

TPR: domain 3 of 4, from 571 to 597: score 6.3, E = 5.7
                   *->GnaylklgkydeAieayekALeldPnn<-*
                      +  +  +++y++A   ++ +L+ dPn+
     K09A9.6   571    AISFVMMKRYEDARTVLKNVLANDPNH    597

TPR: domain 4 of 4, from 636 to 662: score 7.8, E = 2.1
                   *->aeayynlGnaylklgkydeAieayekA<-*
                      ++ yy+lG+ +  lg+  eA + y+kA
     K09A9.6   636    PKFYYQLGHGLTTLGRKSEADAVYQKA    662

Asp_Arg_Hydrox: domain 1 of 1, from 636 to 871: score 439.7, E = 2.5e-128
                   *->gkfYaslgdalsrlgqkfRGreakrlyrqavdhgtfmapiAETqrsl
                      +kfY++lg++l++lg+k   +ea+++y++a+++g+fm+++   qrsl
     K09A9.6   636    PKFYYQLGHGLTTLGRK---SEADAVYQKAAQMGVFMTAQ---QRSL 676

                   ynvssLparaPywdpsafgftpelkkLerNWqtIRdEalaLldegdirpg
                   yn+++L++r ++w++++++++++lk++er+W+tIR+E++++l++  ++ +
     K09A9.6   677 YNIEGLTGR-AWWAMDQTPYSKFLKTVERQWATIRQEGMEVLKD--CS-D 722

                   aflpedAGfnlffkggWkrFyLkwygravpsAcrrcPkTtaLLaeiPevk
                   ++l+++  ++l+++g+Wk+F++++++++++s+c+r+P+T+ +L+e+++++
     K09A9.6   723 CWLDHN--QQLVIDGQWKFFPIMSEQNFIKSSCERMPQTCLILQEFAASS 770

                   gArrGqvmfSvLpPGtShivpHGTVDSrGPtngrLRvHLGLvtPngekGR
                   +A+++++++SvL++G+ +i+pH     +GPtn++L++HLGLv+P++
     K09A9.6   771 NASKSDMHLSVLSSGA-SILPH-----CGPTNYHLQAHLGLVSPSE---- 810

                   PAcfirVggerktWrdGecliFDDsFeHevwndgstedqtRlvLfvDvwh
                     ++irVg+e+k+Wr+G+++i+DDsFeHe+++dg++++++RlvL++++wh
     K09A9.6   811 --ARIRVGNETKGWRSGKFIIYDDSFEHELQFDGASSSSFRLVLTIQLWH 858

                   PelapwatalrraLsai<-*
                   Pe++p   ++r +Ls+
     K09A9.6   859 PEVQP---HQR-VLSFL    871

[DB home][top]