Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K09F5.3a
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Query:  K09F5.3a  CE12022  locus:uvt-1  status:Partially_confirmed TR:O17943 protein_id:AAB52676.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
SapB_2   Saposin-like type B, region 2                   32.5    6.1e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SapB_2     1/1     988  1022 .]     1    35 []    32.5  6.1e-08

Alignments of top-scoring domains:
SapB_2: domain 1 of 1, from 988 to 1022: score 32.5, E = 6.1e-08
                   *->sdqCkefVdqYgpliidlLesgldPkevCsklglC<-*
                       ++C+++ +  ++ ii+ Le g+ P++vC+kl+ C
    K09F5.3a   988    EKECEKYGNSKLDPIINELEGGTAPEDVCKKLKEC    1022



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