Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K09F5.3a
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Query: K09F5.3a CE12022 locus:uvt-1 status:Partially_confirmed TR:O17943 protein_id:AAB52676.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SapB_2 Saposin-like type B, region 2 32.5 6.1e-08 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SapB_2 1/1 988 1022 .] 1 35 [] 32.5 6.1e-08
Alignments of top-scoring domains:
SapB_2: domain 1 of 1, from 988 to 1022: score 32.5, E = 6.1e-08
*->sdqCkefVdqYgpliidlLesgldPkevCsklglC<-*
++C+++ + ++ ii+ Le g+ P++vC+kl+ C
K09F5.3a 988 EKECEKYGNSKLDPIINELEGGTAPEDVCKKLKEC 1022