Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10B2.5
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Query: K10B2.5 CE02012 status:Partially_confirmed TR:Q09994 protein_id:AAA68262.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PH PH domain 57.1 1.1e-14 1
thaumatin Thaumatin family -0.1 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
thaumatin 1/1 64 76 .. 26 38 .. -0.1 6.9
PH 1/1 893 1005 .. 1 85 [] 57.1 1.1e-14
Alignments of top-scoring domains:
thaumatin: domain 1 of 1, from 64 to 76: score -0.1, E = 6.9
*->nsGqswsInvpaG<-*
++G +w++n+p+G
K10B2.5 64 SRGDTWRLNAPRG 76
PH: domain 1 of 1, from 893 to 1005: score 57.1, E = 1.1e-14
*->vikeGwLlkks.......kswkkRyfvLfndvLlyykdskkkpkgsi
v+++G+L++ ++++++++ w +++++L+++ ++++k+ +++ ++
K10B2.5 893 VEYRGFLYLFDerspngeAAWDRYWAMLHRGIIFFWKNPIDEKNQKV 939
pLsgcqvek.pd............kncFeirt.dr.......tlllqaes
pLs++ ++k ++++ +++++++++++ +e+ ++ ++ ++++++l+aes
K10B2.5 940 PLSQIDLTKcTNqsveetrngrdhEFHIELLIdQTpsllekrRVVLAAES 989
eeerkeWvkaiqsair<-*
++++ +W++ai++ +
K10B2.5 990 SDHLASWLNAINDTLF 1005