Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10B3.6
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Query: K10B3.6 CE07369 status:Partially_confirmed TR:Q21407 protein_id:AAB53873.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GDPD Glycerophosphoryl diester phosphodiest 306.1 2.8e-90 1
Glyco_hydro_17 Glycosyl hydrolases family 17 2.6 4.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_hydro_17 1/1 617 625 .. 318 326 .] 2.6 4.6
GDPD 1/1 416 718 .. 1 315 [] 306.1 2.8e-90
Alignments of top-scoring domains:
Glyco_hydro_17: domain 1 of 1, from 617 to 625: score 2.6, E = 4.6
*->kqpkYpidF<-*
kq+kYp++F
K10B3.6 617 KQHKYPVSF 625
GDPD: domain 1 of 1, from 416 to 718: score 306.1, E = 2.8e-90
*->HRGasgsaP....lpENTllafrkAaeaGADgvElDVqlTKDGvpVv
HRG ++s++++ +++ENT+ +++ Aa GAD+vE+DVqlTKD + Vv
K10B3.6 416 HRGMGSSYTknigQRENTIFSLNEAARRGADYVEMDVQLTKDLKTVV 462
mHDetLdRttdgagsfesvgglrvkdlTleeLkkldltedl.l.dl.ll.
+HD+++ + + g++s++s+++ ++++l+e+ d l+l +l+ll+
K10B3.6 463 YHDFHVLVAVAGRDSPSSTPTAAGENKSLHEIAIKD----LtLaQLnLLh 508
l.h.Sv.dstfeagsgrsrpfsgervplwsgKnr.heeafpfpTLeevle
++h S+ ++ +++ ++++s + ++ +++e + pfp L++vl+
K10B3.6 509 FeHiSRaNG---SSAESPVALSVTPSKT-----EtDELHVPFPSLAQVLR 550
eviqdvgfnieikikiydeqieveevfeivkdlnasvddilkkgvlkkad
+v+++vg+nieik+++y+ ++++e+ + ++++n++vd+il+ v ++a+
K10B3.6 551 HVDENVGLNIEIKYPMYMQDGSHEC--QGYFEQNKFVDIILAE-VAEHAG 597
prrvifssFdpdslkrlrelapprmelplvfLfv.rdealdpekDpRgsl
+rr+ifs+F+pd+++++ ++++ ++p+ fL+v+++++++p++D+R ++
K10B3.6 598 NRRIIFSCFEPDICTMITKKQH---KYPVSFLVVgATNRYMPFQDIRSDC 644
leraarfagapallgeialvaeglgpwkmiIekdpdlvkraharGlkVfv
+++aa+fa ++llg++++ +e+l d+ + a ++Gl fv
K10B3.6 645 SKIAANFAAGCELLGVNFHSEELL--------IDQKPIEIAEKYGLIKFV 686
WTvnned.eeemyrllklGVDgviTDrpdllr<-*
W+ + +++e + ++ +++VDg+i Dr+++
K10B3.6 687 WGDDLNSkEVQKHFRDEMNVDGLIFDRIGEDE 718