Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K10B3.6
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Query:  K10B3.6  CE07369    status:Partially_confirmed TR:Q21407 protein_id:AAB53873.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
GDPD           Glycerophosphoryl diester phosphodiest   306.1    2.8e-90   1
Glyco_hydro_17 Glycosyl hydrolases family 17              2.6        4.6   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Glyco_hydro_17   1/1     617   625 ..   318   326 .]     2.6      4.6
GDPD             1/1     416   718 ..     1   315 []   306.1  2.8e-90

Alignments of top-scoring domains:
Glyco_hydro_17: domain 1 of 1, from 617 to 625: score 2.6, E = 4.6
                   *->kqpkYpidF<-*
                      kq+kYp++F
     K10B3.6   617    KQHKYPVSF    625

GDPD: domain 1 of 1, from 416 to 718: score 306.1, E = 2.8e-90
                   *->HRGasgsaP....lpENTllafrkAaeaGADgvElDVqlTKDGvpVv
                      HRG ++s++++ +++ENT+ +++ Aa  GAD+vE+DVqlTKD + Vv
     K10B3.6   416    HRGMGSSYTknigQRENTIFSLNEAARRGADYVEMDVQLTKDLKTVV 462

                   mHDetLdRttdgagsfesvgglrvkdlTleeLkkldltedl.l.dl.ll.
                   +HD+++ + + g++s++s+++   ++++l+e+   d    l+l +l+ll+
     K10B3.6   463 YHDFHVLVAVAGRDSPSSTPTAAGENKSLHEIAIKD----LtLaQLnLLh 508

                   l.h.Sv.dstfeagsgrsrpfsgervplwsgKnr.heeafpfpTLeevle
                   ++h S+ ++    +++ ++++s  + ++     +++e + pfp L++vl+
     K10B3.6   509 FeHiSRaNG---SSAESPVALSVTPSKT-----EtDELHVPFPSLAQVLR 550

                   eviqdvgfnieikikiydeqieveevfeivkdlnasvddilkkgvlkkad
                   +v+++vg+nieik+++y+ ++++e+  + ++++n++vd+il+  v ++a+
     K10B3.6   551 HVDENVGLNIEIKYPMYMQDGSHEC--QGYFEQNKFVDIILAE-VAEHAG 597

                   prrvifssFdpdslkrlrelapprmelplvfLfv.rdealdpekDpRgsl
                   +rr+ifs+F+pd+++++ ++++   ++p+ fL+v+++++++p++D+R ++
     K10B3.6   598 NRRIIFSCFEPDICTMITKKQH---KYPVSFLVVgATNRYMPFQDIRSDC 644

                   leraarfagapallgeialvaeglgpwkmiIekdpdlvkraharGlkVfv
                   +++aa+fa  ++llg++++ +e+l         d+  +  a ++Gl  fv
     K10B3.6   645 SKIAANFAAGCELLGVNFHSEELL--------IDQKPIEIAEKYGLIKFV 686

                   WTvnned.eeemyrllklGVDgviTDrpdllr<-*
                   W+ + +++e + ++  +++VDg+i Dr+++
     K10B3.6   687 WGDDLNSkEVQKHFRDEMNVDGLIFDRIGEDE    718



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